Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add antigenomics/vdjdb-db --skill vdjdb-publishgit clone --depth 1 https://github.com/antigenomics/vdjdb-dbWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/antigenomics/vdjdb-db/vdjdb-publish)<a href="https://agentmods.dev/skills/antigenomics/vdjdb-db/vdjdb-publish"><img src="https://agentmods.dev/badge/skills/antigenomics/vdjdb-db/vdjdb-publish/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/antigenomics/vdjdb-db/vdjdb-publish"><img src="https://agentmods.dev/badge/skills/antigenomics/vdjdb-db/vdjdb-publish.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00038 | $0.01521 |
| Opus 5 | $0.00019 | $0.00760 |
| Sonnet 5 | $0.00008 | $0.00304 |
| Haiku 4.5 | $0.00004 | $0.00152 |
Grade C, and why
vdjdb-publish scanned grade C with 2 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 10d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Downloads and executes remote codehighSupply chain
curl | sh runs whatever the server returns today, which is not necessarily what it returned when this was reviewed.
curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&id=$pubmedid&retmode=json" | python3 -c " Makes network callslowCapability
Not a fault in itself. Listed so you know the mod talks to something, and to what.
curl -s "https://api.ncbi.nlm.nih.gov/lit/ctxp/v1/pubmed/?format=apa&id=$pubmedid" The source is not reproduced here
Licensed AGPL-3.0
The repository is licensed AGPL-3.0, which this catalogue does not treat as permission to reproduce the file. Read it at the source.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 10d ago First seen · 164 lines · 38 tokens per session scan C 22fcaeea9b59
vdjdb-publish is a skill published in the GitHub repository antigenomics/vdjdb-db (155 stars, last pushed 14d ago), licensed AGPL-3.0. It adds 38 tokens to every session and 1,521 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it C with 2 findings (downloads and executes remote code, makes network calls). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
Other skills, from other repositories
linux-git-bash
Write set -euo pipefail bash pipelines, parse FASTA/FASTQ/VCF/GTF/BED with grep/awk/sed and BAM with samtools, and run git workflows. Use when writing/debugging shell scripts or fixing git/BOM/CRLF issues.
foundations-git-version-control
Version-control bioinformatics scripts with git init/add/commit/branch/merge/stash/tag and .gitignore for FASTQ/BAM/VCF. Use when setting up a repo, undoing a commit, or resolving a merge conflict.
manuscript-as-code
Treat manuscripts as software: version control, reproducible builds, figure pipelines, CI, and structured repo layout. Helps teams avoid 'finalv7' chaos and ensures submission-ready artifacts.
latex-diff
Compare two LaTeX files, project directories, or Git revisions and produce human-readable plus machine-readable severity-graded semantic changes. Use when determining what changed between manuscript versions or preparing a revision audit bundle. Not for proofreading one version; use $proofread.
implement-experiment
Deploy experiment artifacts in an isolated git worktree following an approved experiment plan, with per-phase commits.
git-for-research-code
When the user wants to version-control optimization research code - small commits per experiment change, tags for paper result snapshots, .gitignore for solver logs, linking result tables to commit hashes, and branch strategy for risky refactors. Also use when the user mentions "git workflow," "version control…