7 tagged immunology, measured the same way as everything else here.
Browse within: antigen 6binding 6bioinformatics 6hla 6
Skill Claude CodeCodex
Identify and classify duplicate TCR records across all VDJdb chunks at three resolution levels (beta-only, paired, and same-epitope multi-MHC), categorise by publication source, author overlap, and flag spurious high-frequency records.
Skill Claude CodeCodex
Harmonize antigen.gene and antigen.species fields in a VDJdb chunk to canonical VDJdb naming. Detects spurious gene/species names, resolves inconsistencies (same epitope → multiple names), and warns about epitopes that are exact substrings of longer epitopes. Invoked standalone or from /proofread when spurious values…
Skill Claude CodeCodex
Run QC scripts on a VDJdb chunk, report every error with a suggested fix, verify the output of previous /extract and /format steps, estimate confidence scores, and flag gaps in current pysrc QC coverage.