openalex-database

openalex-database is a skill for Claude Code, Codex from beita6969/ScienceClaw. It costs 76 tokens per session (3,141 once invoked), scanned A, a copy of openalex-database, MIT.

A search and analysis tool for OpenAlex, an open catalog containing scholarly publications, researchers, institutions, topics, sources, and funders.

In plain words
What is it for?
Use it to search papers, find works by authors or institutions, track citations, discover open-access research, and perform bibliometric analysis.
Why use it?
It helps organize large amounts of academic literature and examine publication output, citations, and research trends.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Good fit Use it to search papers, find works by authors or institutions, track citations, discover open-access research, and perform bibliometric analysis.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/beita6969/scienceclaw/openalex-database
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add beita6969/ScienceClaw --skill openalex-database
Clone the repo
git clone --depth 1 https://github.com/beita6969/ScienceClaw

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for openalex-database

README.md
[![agentmods](https://agentmods.dev/badge/skills/beita6969/scienceclaw/openalex-database.svg)](https://agentmods.dev/skills/beita6969/scienceclaw/openalex-database)
Your own site
<a href="https://agentmods.dev/skills/beita6969/scienceclaw/openalex-database"><img src="https://agentmods.dev/badge/skills/beita6969/scienceclaw/openalex-database.svg" alt="Measured on agentmods" height="20"></a>
Per session 76 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 3,141 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 1 finding. A grade says what 26 rules found in the file — not that it is safe.
Origin 86% copy Near-identical to another mod in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00076 $0.03141
Opus 5 $0.00038 $0.01571
Sonnet 5 $0.00015 $0.00628
Haiku 4.5 $0.00008 $0.00314

Measured 4d ago against content hash 2e727022570d, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-07, from the pricing page.

Security

Grade A, and why

openalex-database scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 4d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Makes network callslowCapability

Not a fault in itself. Listed so you know the mod talks to something, and to what.

citing_response = requests.get(
Origin

This is a copy

86% identical to openalex-database — 6 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

skills/openalex-database/SKILL.md · 494 lines

How it starts

The opening of the file, as written. The whole thing — 494 lines — stays where its author put it; the contents beside it link to each section on GitHub.

OpenAlex Database

Overview

OpenAlex is a comprehensive open catalog of 240M+ scholarly works, authors, institutions, topics, sources, publishers, and funders. This skill provides tools and workflows for querying the OpenAlex API to search literature, analyze research output, track citations, and conduct bibliometric studies.

Quick Start

Basic Setup

Always initialize the client with an email address to access the polite pool (10x rate limit boost):

from scripts.openalex_client import OpenAlexClient

client = OpenAlexClient(email="[email protected]")

Installation Requirements

Install required package using uv:

uv pip install requests

No API key required - OpenAlex is completely open.

Core Capabilities

1. Search for Papers

Use for: Finding papers by title, abstract, or topic

# Simple search
results = client.search_works(
    search="machine learning",
    per_page=100
)

# Search with filters
results = client.search_works(
    search="CRISPR gene editing",
    filter_params={
        "publication_year": ">2020",
        "is_oa": "true"
    },
    sort="cited_by_count:desc"
)

2. Find Works by Author

Use for: Getting all publications by a specific researcher

Use the two-step pattern (entity name → ID → works):

from scripts.query_helpers import find_author_works

works = find_author_works(
    author_name="Jennifer Doudna",
    client=client,
    limit=100
)

Manual two-step approach:

# Step 1: Get author ID
author_response = client._make_request(
    '/authors',
    params={'search': 'Jennifer Doudna', 'per-page': 1}
)
author_id = author_response['results'][0]['id'].split('/')[-1]

# Step 2: Get works
works = client.search_works(
    filter_params={"authorships.author.id": author_id}
)

3. Find Works from Institution

Use for: Analyzing research output from universities or organizations

from scripts.query_helpers import find_institution_works

works = find_institution_works(
    institution_name="Stanford University",
    client=client,
    limit=200
)

Read the full file on GitHub · 494 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 4d ago First seen · 494 lines · 76 tokens per session scan A 2e727022570d

Subscribe to this mod's changes

openalex-database is a skill published in the GitHub repository beita6969/ScienceClaw (895 stars, last pushed 3mo ago), licensed MIT. It adds 76 tokens to every session and 3,141 once invoked, about $0.0004 per session on Opus 5. A static security scan graded it A with 1 finding (makes network calls). It is 86% identical to openalex-database, differing in 6 lines, and is treated as a copy.

Related

Other skills, from other repositories

scanpy

Standard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression, and visualization. Best for exploratory scRNA-seq analysis with established workflows. For deep learning models use scvi-tools; for data format questions use…

synthetic-sciences/openscience · 68 tokens

structure-prediction

Protein structure prediction from sequence. ESMFold-based, single GPU, no MSA needed. Predicts 3D structures with pLDDT confidence scores for drug discovery targets.

synthetic-sciences/openscience · 42 tokens

biomcp

Search and retrieve biomedical data - genes, variants, clinical trials, diagnostic tests, articles, drugs, diseases, pathways, proteins, adverse events, pharmacogenomics, and phenotype-disease matching. Use for gene function, variant pathogenicity, trials, diagnostics, drug safety, pathway context, disease workups…

genomoncology/biomcp · 70 tokens

biomcp-research

Do biomedical literature and variant research with the BioMCP CLI, and file what you learn about the tool itself as issues in the biomcp repo.

genomoncology/biomcp · 36 tokens

biological-expert

Expert-level biology, biotechnology, genetics, bioinformatics, and computational biology. Use when the user mentions biology, biotechnology, genetics, bioinformatics, or genomics, or when the task involves Molecular Biology, Genomics & Bioinformatics, Systems Biology, or Data Analysis.

personamanagmentlayer/pcl · 59 tokens

biopython

Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use…

synthetic-sciences/openscience · 76 tokens