openai-whisper
145Skill Claude CodeCodex
Local speech-to-text with the Whisper CLI (no API key).
🔬🦞 A self-evolving AI research colleague for scientists. 285 skills, zero hallucination, persistent memory.
This repository also configures its own agents. See what ScienceClaw tells them →
Skill Claude CodeCodex
Local speech-to-text with the Whisper CLI (no API key).
Skill Claude CodeCodex
Query and analyze scholarly literature using the OpenAlex database. This skill should be used when searching for academic papers, analyzing research trends, finding works by authors or institutions, tracking citations, discovering open access publications, or conducting bibliometric analysis across 240M+ scholarly…
Skill Claude CodeCodex
Open academic metadata via OpenAlex API. Use when: user needs author profiles, institution data, concept mapping, or open citation data. NOT for: full-text search or downloading papers.
Skill Claude CodeCodex
Control Philips Hue lights and scenes via the OpenHue CLI.
Skill Claude CodeCodex
Query Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/omics evidence, known drugs, for therapeutic target identification.
Skill Claude CodeCodex
Best practices for using the oracle CLI (prompt + file bundling, engines, sessions, and file attachment patterns).
Skill Claude CodeCodex
Foodora-only CLI for checking past orders and active order status (Deliveroo WIP).
Skill Claude CodeCodex
Read, summarize, and critically analyze scientific papers. Extract key findings, methodology, limitations, and contributions. Use when user shares a paper (PDF/URL/DOI), asks to summarize a paper, critique methodology, extract data from a paper, compare papers, or do a critical review. Triggers on "summarize this…
Skill Claude CodeCodex
Write scientific papers following IMRaD structure with proper citations. Use when: user asks to draft or improve a scientific paper, write specific sections, or format citations. NOT for: non-academic writing or presentation slides.
Skill Claude Code
Search the web, extract URL content, and run deep research using the Parallel Chat API and Extract API. Use for ALL web searches, research queries, and general information gathering. Provides synthesized summaries with citations.
Skill Claude Code
Explore and optimize simulation parameters via design of experiments (DOE), sensitivity analysis, and optimizer selection. Use for calibration, uncertainty studies, parameter sweeps, LHS sampling, Sobol analysis, surrogate modeling, or Bayesian optimization setup.
Skill Claude CodeCodex
Conducts patent landscape analysis including prior art searches, patent claim interpretation, freedom-to-operate assessment, and intellectual property strategy for scientific inventions; trigger when users discuss patents, prior art, IP protection, or technology licensing.
Skill Claude CodeCodex
Draft patent applications for scientific inventions, covering claims, specification, and prior art analysis.
Skill Claude CodeCodex
Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmCIF), retrieve metadata, for structural biology and drug discovery.
Skill Claude CodeCodex
Query the RCSB PDB API for protein 3D structures, experimental metadata, and structure files. Use when the user needs crystal or cryo-EM structure data, PDB entries, resolution info, or structure file downloads. NOT for protein sequences/annotations (use UniProt), gene data (use NCBI), or pathway info (use KEGG).
Skill Claude CodeCodex
Comprehensive PDF manipulation toolkit for extracting text and tables, creating new PDFs, merging/splitting documents, and handling forms. When Claude needs to fill in a PDF form or programmatically process, generate, or analyze PDF documents at scale.
Skill Claude CodeCodex needs its repo
Production-ready PDF processing with forms, tables, OCR, validation, and batch operations. Use when working with complex PDF workflows in production environments, processing large volumes of PDFs, or requiring robust error handling and validation.
Skill Claude CodeCodex
Extract text and tables from PDF files, fill forms, merge documents. Use when working with PDF files or when the user mentions PDFs, forms, or document extraction.
Skill Claude CodeCodex
Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating new PDFs, filling PDF forms, encrypting/decrypting PDFs, extracting images, and…
Skill Claude CodeCodex
Capture and automate macOS UI with the Peekaboo CLI.
Skill Claude CodeCodex
Conducts structured peer review of scientific manuscripts including methodological evaluation, statistical assessment, clarity analysis, and constructive feedback generation following journal-specific guidelines; trigger when users ask for manuscript critique, reviewer reports, or feedback on research papers.
Skill Claude Code
Identify computational bottlenecks, analyze scaling behavior, estimate memory requirements, and receive optimization recommendations for any computational simulation. Use when simulations are slow, investigating parallel efficiency, planning resource allocation, or seeking performance improvements through timing…
Skill Claude CodeCodex
Perform AI-powered web searches with real-time information using Perplexity models via LiteLLM and OpenRouter. This skill should be used when conducting web searches for current information, finding recent scientific literature, getting grounded answers with source citations, or accessing information beyond the model…
Skill Claude CodeCodex
Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial genomics, viral phylodynamics, protein family analysis, and molecular clock studies.
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