write-scientific-manuscript

write-scientific-manuscript is a skill for Claude Code, Codex from Boom5426/Nature-Paper-Skills. It costs 152 tokens per session (2,753 once invoked), scanned A, original, MIT.

Guidance for making scientific manuscript prose easier to follow while preserving its technical meaning. It focuses on clear logic, evidence, topic sentences, comparisons, and precise references to data or measurements.

In plain words
What is it for?
Use it to diagnose and revise difficult manuscript passages, clarify claims and evidence, improve paragraph flow, and fix vague or overloaded sentences.
Why use it?
Technically correct writing can still hide its main point or leave the reader unsure how one sentence follows from another. This helps repair those clarity and reasoning problems before stylistic polishing.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Good fit Use it to diagnose and revise difficult manuscript passages, clarify claims and evidence, improve paragraph flow, and fix vague or overloaded sentences.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/boom5426/nature-paper-skills/write-scientific-manuscript
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add Boom5426/Nature-Paper-Skills --skill write-scientific-manuscript
Clone the repo
git clone --depth 1 https://github.com/Boom5426/Nature-Paper-Skills

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for write-scientific-manuscript

README.md
[![agentmods](https://agentmods.dev/badge/skills/boom5426/nature-paper-skills/write-scientific-manuscript/github.svg)](https://agentmods.dev/skills/boom5426/nature-paper-skills/write-scientific-manuscript)
Your own site
<a href="https://agentmods.dev/skills/boom5426/nature-paper-skills/write-scientific-manuscript"><img src="https://agentmods.dev/badge/skills/boom5426/nature-paper-skills/write-scientific-manuscript/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for write-scientific-manuscript

Your own site · 80×15
<a href="https://agentmods.dev/skills/boom5426/nature-paper-skills/write-scientific-manuscript"><img src="https://agentmods.dev/badge/skills/boom5426/nature-paper-skills/write-scientific-manuscript.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 152 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,753 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00152 $0.02753
Opus 5.5 $0.00061 $0.01101
Sonnet 5.5 $0.00030 $0.00551
Haiku 4.5 $0.00015 $0.00275

Measured 18d ago against content hash 7e2881dbc12b, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

write-scientific-manuscript scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 18d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/core/write-scientific-manuscript/SKILL.md · 225 lines

How it starts

The opening of the file, as written. The whole thing — 225 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Write Scientific Manuscripts

Make the science easy to follow before making the prose elegant. Optimize in this order: scientific logic, reader comprehension, evidential precision, then style.

Where this sits

This skill owns clarity and logic diagnosis. It carries no house style and no punctuation budget.

  • manuscript-optimizer when the problem is above the prose: the claim hierarchy, evidence chain, or figure logic is unstable. Fix that first. Polishing a paragraph whose scientific role is wrong wastes the edit.
  • scientific-writing when a section needs drafting or rewriting into full paragraphs, or when the task names a citation style or a reporting guideline.
  • anti-defensive-writing after the passage logic is settled, when the text reads like an audit report, a rebuttal or a self-critique.
  • scientific-prose-style last, for punctuation and rhythm. This file deliberately carries no em-dash or semicolon rule. That skill owns both, and its cap for each is at most one per paragraph and none in the abstract.
  • results-section-revision when only Results subsection flow and paragraph openings need repair.
  • review-article-architecture when the piece is a Review, survey, or Perspective.
  • rebuttal-response when the prose is a reply to reviewers rather than manuscript text. The claim-calibration ladder there is the same one used below.

Establish the intended meaning

Before rewriting, determine:

  1. What single point must the reader understand?
  2. What information must the reader already know for that point to make sense?
  3. What evidence supports it?
  4. What inference is justified, and what remains uncertain?
  5. Why does the point matter at this location in the manuscript?

Do not polish a sentence whose scientific role is unclear. If necessary, briefly diagnose the logic before drafting.

For file-based revision, identify the authoritative version and preserve citations, figure references, terminology, numbers, and formatting. Read the file before editing it, and rebuild the document when the edit could disturb layout, floats, or cross-references.

Read the full file on GitHub · 225 lines

Files

What ships with it

2 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 18d ago Changed · +23 lines 7e2881dbc12b
  2. 19d ago Changed · +4 lines 358c4eb147ce
  3. 21d ago Changed · +31 lines 68ad0062239c
  4. 28d ago Changed · +2 lines aa1e7b2ff239
  5. 1mo ago First seen · 165 lines · 152 tokens per session scan A 0a0e54cdd416

Subscribe to this mod's changes

write-scientific-manuscript is a skill published in the GitHub repository Boom5426/Nature-Paper-Skills (637 stars, last pushed 15d ago), licensed MIT. It adds 152 tokens to every session and 2,753 once invoked, about $0.0006 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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