ml-nmr-methodology

ml-nmr-methodology is a skill for Claude Code from choxos/BiostatAgent. It costs 43 tokens per session (2,503 once invoked), scanned A, original, MIT.

Method guidance for multilevel network meta-regression (ML-NMR), a statistical method for comparing treatments across studies that may contain either individual patient data or only summary results. It covers adjusting for population differences and predicting results for a specific target population.

In plain words
What is it for?
Use it to plan, conduct, or review ML-NMR analyses involving mixed individual and aggregate data, population adjustment, covariates, priors, and predictions for target populations.
Why use it?
It helps decide when ML-NMR is suitable and how to account for differences between study populations. It also explains choices such as model assumptions, integration, and marginal versus conditional treatment effects.

Skill for Claude Code

Written for Claude Code: shipped in a Claude Code plugin.

Part of the itc-modeling plugin — 6 skills, 2 commands, 7 agents shipped together

Good fit Use it to plan, conduct, or review ML-NMR analyses involving mixed individual and aggregate data, population adjustment, covariates, priors, and predictions for target populations.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/choxos/biostatagent/ml-nmr-methodology
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add choxos/BiostatAgent --skill ml-nmr-methodology
Clone the repo
git clone --depth 1 https://github.com/choxos/BiostatAgent

Made for: Claude Code.

Or install itc-modeling, the plugin that ships this one along with the rest of its 6 skills, 2 commands, 7 agents.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for ml-nmr-methodology

README.md
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Your own site
<a href="https://agentmods.dev/skills/choxos/biostatagent/ml-nmr-methodology"><img src="https://agentmods.dev/badge/skills/choxos/biostatagent/ml-nmr-methodology/github.svg" alt="Measured on agentmods" height="20"></a>

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agentmods 80×15 button for ml-nmr-methodology

Your own site · 80×15
<a href="https://agentmods.dev/skills/choxos/biostatagent/ml-nmr-methodology"><img src="https://agentmods.dev/badge/skills/choxos/biostatagent/ml-nmr-methodology.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 43 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,503 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00043 $0.02503
Opus 5 $0.00022 $0.01252
Sonnet 5 $0.00009 $0.00501
Haiku 4.5 $0.00004 $0.00250

Measured 10d ago against content hash 847793f7a6c4, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-09, from the pricing page.

Security

Grade A, and why

ml-nmr-methodology scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 10d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

plugins/itc-modeling/skills/ml-nmr-methodology/SKILL.md · 407 lines

How it starts

The opening of the file, as written. The whole thing — 407 lines — stays where its author put it; the contents beside it link to each section on GitHub.

ML-NMR Methodology

Comprehensive methodological guidance for conducting rigorous Multilevel Network Meta-Regression following NICE DSU guidance and multinma package documentation.

When to Use This Skill

  • Deciding whether ML-NMR is appropriate
  • Setting up integration points for AgD
  • Specifying priors and models
  • Understanding marginal vs conditional effects
  • Predicting to target populations
  • Reviewing ML-NMR code or results

When to Use ML-NMR

ML-NMR is Appropriate When:

  1. Network Structure

    • Multiple treatments form (partial) network
    • Some studies have IPD, others only AgD
    • Want to leverage all available evidence
  2. Population Differences

    • Effect modifiers differ across populations
    • Standard NMA transitivity violated
    • Need population-adjusted estimates
  3. Target Population

    • Want predictions for specific population
    • Different from any single trial population
    • Policy-relevant population definition

ML-NMR vs Alternatives

Scenario Recommended Method
All AgD, similar populations Standard NMA
All AgD, different populations NMA meta-regression
IPD for one study, AgD for one MAIC or STC
IPD + AgD network ML-NMR
Disconnected with IPD ML-NMR (with assumptions)

Key Concepts

Individual-Level vs Study-Level

ML-NMR Models Both:
├── Individual-level (within IPD studies)
│   - Patient-level outcomes
│   - Patient-level covariates
│   - Exact covariate-outcome relationships
│
└── Study-level (for AgD studies)
    - Aggregate outcomes
    - Covariate summaries
    - Integration over covariate distribution

Population Adjustment

Problem: AgD studies provide aggregate summaries, but we need individual-level predictions.

Solution: Numerical integration over the AgD population's covariate distribution.

For AgD study:
Expected outcome = ∫ f(outcome | covariates, treatment) × p(covariates) d(covariates)

Where:
- f(): Individual-level outcome model (from IPD)
- p(): Covariate distribution in AgD population

Read the full file on GitHub · 407 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 10d ago First seen · 407 lines · 43 tokens per session scan A 847793f7a6c4

Subscribe to this mod's changes

ml-nmr-methodology is a skill published in the GitHub repository choxos/BiostatAgent (11 stars, last pushed 3mo ago), licensed MIT. It adds 43 tokens to every session and 2,503 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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