clinical-trials skills

genomoncology/biomcp

Skill Claude CodeCodex

Part of biomcp

Do biomedical literature and variant research with the BioMCP CLI, and file what you learn about the tool itself as issues in the biomcp repo.

genomoncology/biomcp

Skill Claude CodeCodex

Part of biomcp

Search and retrieve biomedical data - genes, variants, clinical trials, diagnostic tests, articles, drugs, diseases, pathways, proteins, adverse events, pharmacogenomics, and phenotype-disease matching. Use for gene function, variant pathogenicity, trials, diagnostics, drug safety, pathway context, disease workups…

cyanheads/clinicaltrialsgov-mcp-server

Skill Claude CodeCodex

Part of clinicaltrialsgov-mcp-server

Scaffold a new MCP tool definition. Use when the user asks to add a tool, create a new tool, or implement a new capability for the server.

cyanheads/clinicaltrialsgov-mcp-server

Skill Claude CodeCodex

Part of clinicaltrialsgov-mcp-server

MCP definition linter rules reference. Use when bun run lint:mcp or bun run devcheck reports a lint error or warning (format-parity, schema-is-object, name-format, server-json-, etc.) and you need to understand the rule, its severity, and how to fix it. Every rule ID the linter emits has an entry in this doc.

cyanheads/clinicaltrialsgov-mcp-server

Skill Claude CodeCodex

Part of clinicaltrialsgov-mcp-server

Design the tool surface, resources, and service layer for a new MCP server. Use when starting a new server, planning a major feature expansion, or when the user describes a domain/API they want to expose via MCP. Produces a design doc at docs/design.md that drives implementation.

dermatologist/pyomop

Skill Claude CodeCodex

Generates a mapping schema to transform any EMR/healthcare database to OHDSI OMOP CDM format. Use when the user needs to map source healthcare data tables to OMOP using pyomop-migrate, extract a source database schema, define column mappings, resolve concept lookups, validate data quality, and produce a…

choxos/BiostatAgent

Skill Claude CodeCodex

Part of clinical-trial-simulation

Common clinical trial design patterns including multi-arm, multi-endpoint, adaptive, and stratified designs. Use when selecting or implementing trial designs.

choxos/BiostatAgent

Skill Claude CodeCodex

Part of clinical-trial-simulation

Group sequential design methods for interim analyses, alpha spending, and futility stopping. Use when designing trials with interim looks or implementing spending functions.

choxos/BiostatAgent

Skill Claude CodeCodex

Part of clinical-trial-simulation

Core Mediana package functions for Clinical Scenario Evaluation (CSE). Use when designing data models, analysis models, evaluation models, and running comprehensive trial simulations.

donbr/lifesciences-research

Skill Claude CodeCodex

Queries clinical databases (Open Targets, ClinicalTrials.gov) via curl for target-disease associations, target tractability assessment, and clinical trial discovery. This skill should be used when the user asks to "validate drug targets", "find clinical trials", "assess target tractability", "discover disease…

donbr/lifesciences-research

Skill Claude CodeCodex

Validates synthetic lethality claims from CRISPR knockout screens using BioGRID ORCS 5-phase workflow. This skill should be used when the user asks to "validate synthetic lethality", "query CRISPR essentiality data", "find gene dependencies", "compare cell line screens", or mentions BioGRID ORCS, gene knockout data…

donbr/lifesciences-research

Skill Claude CodeCodex

Orchestrates life sciences APIs to build knowledge graphs using the Fuzzy-to-Fact protocol, combining MCPs for nodes and curl for edges, then persisting to Graphiti. This skill should be used when the user asks to "build knowledge graphs", "find biological connections", "explore drug repurposing", "validate drug…