chembl skills

yorkeccak/scientific-skills

Skill Claude CodeCodex

Search ChEMBL bioactive molecules database with natural language queries. Find compounds and assay data with Valyu semantic search.

donbr/lifesciences-research

Skill Claude CodeCodex

Queries clinical databases (Open Targets, ClinicalTrials.gov) via curl for target-disease associations, target tractability assessment, and clinical trial discovery. This skill should be used when the user asks to "validate drug targets", "find clinical trials", "assess target tractability", "discover disease…

donbr/lifesciences-research

Skill Claude CodeCodex

Validates synthetic lethality claims from CRISPR knockout screens using BioGRID ORCS 5-phase workflow. This skill should be used when the user asks to "validate synthetic lethality", "query CRISPR essentiality data", "find gene dependencies", "compare cell line screens", or mentions BioGRID ORCS, gene knockout data…

donbr/lifesciences-research

Skill Claude CodeCodex

Orchestrates life sciences APIs to build knowledge graphs using the Fuzzy-to-Fact protocol, combining MCPs for nodes and curl for edges, then persisting to Graphiti. This skill should be used when the user asks to "build knowledge graphs", "find biological connections", "explore drug repurposing", "validate drug…

cyanheads/chembl-mcp-server

Skill Claude CodeCodex

Scaffold a new MCP tool definition. Use when the user asks to add a tool, create a new tool, or implement a new capability for the server.

cyanheads/chembl-mcp-server

Skill Claude CodeCodex

MCP definition linter rules reference. Use when bun run lint:mcp or bun run devcheck reports a lint error or warning (format-parity, schema-is-object, name-format, server-json-, etc.) and you need to understand the rule, its severity, and how to fix it. Every rule ID the linter emits has an entry in this doc.

cyanheads/chembl-mcp-server

Skill Claude CodeCodex

Design the tool surface, resources, and service layer for a new MCP server. Use when starting a new server, planning a major feature expansion, or when the user describes a domain/API they want to expose via MCP. Produces a design doc at docs/design.md that drives implementation.