MCP server for life-science knowledge graphs
This repository also configures its own agents. See what togomcp tells them →
Skill Claude CodeCodex
Run a multi-scale disease pathophysiology analysis — molecular defects through to clinical symptoms — using TogoMCP (RDF Portal SPARQL), TogoID ID conversion, OLS4, and PubMed. Use whenever the user asks to "analyze a disease", build a disease mechanism model, find disease-associated proteins/pathways/drugs, map a…
Skill Claude CodeCodex
PRISM finds entities (genes, proteins, compounds) at the INTERSECTION of two or more property sets on RDF knowledge graphs via TogoMCP — e.g. "genes common to disease X and druggable pathway Y", "targets both linked to phenotype P and modulated by existing drugs". Use whenever the user asks a set-intersection /…
Skill Claude CodeCodex
Systematically validate a research article's claims against TogoMCP RDF databases — molecular formulas, reaction equations, pathways, protein function, GO definitions — instead of trusting the paper's text or keyword-search snippets. Use whenever the user asks to "analyze this paper/article", fact-check or validate a…
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: