template-reproducibility-audit

template-reproducibility-audit is a skill for Claude Code, Codex from docxology/template. It costs 70 tokens per session (694 once invoked), scanned A, original, Apache-2.0.

A repeatability audit for research projects that checks whether the same pipeline produces the same files and numbers from a clean starting point.

In plain words
What is it for?
Setting fixed seeds, regenerating outputs, comparing two clean runs, finding drift, and documenting the commands needed to reproduce results.
Why use it?
It exposes randomness, timestamps, machine-specific paths, and hand-written values that can make results change between runs.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one. Also seen: mentions AGENTS.md.

Needs its repository: it runs a file that does not travel with it, so clone the repository first. The line is uv run python scripts/runner/execute_pipeline.py --project <project> --core-only.

Install

Getting it into your agent

It runs from inside its repository, so the clone comes first — what it calls does not travel with the file alone.

Clone the repo
git clone --depth 1 https://github.com/docxology/template
agentmods
npx agentmods add skills/docxology/template/reproducibility-audit

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for template-reproducibility-audit

README.md
[![agentmods](https://agentmods.dev/badge/skills/docxology/template/reproducibility-audit.svg)](https://agentmods.dev/skills/docxology/template/reproducibility-audit)
Your own site
<a href="https://agentmods.dev/skills/docxology/template/reproducibility-audit"><img src="https://agentmods.dev/badge/skills/docxology/template/reproducibility-audit.svg" alt="Measured on agentmods" height="20"></a>
Per session 70 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 694 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00070 $0.00694
Opus 5 $0.00035 $0.00347
Sonnet 5 $0.00014 $0.00139
Haiku 4.5 $0.00007 $0.00069

Measured 6d ago against content hash 445b7c72d800, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-06, from the pricing page.

Security

Grade A, and why

template-reproducibility-audit scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 6d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

docs/prompts/reproducibility-audit/SKILL.md · 72 lines

How it starts

The opening of the file, as written. The whole thing — 72 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Reproducibility audit

Complements manuscript-claim-verification (claim truth) by focusing on stability of artifacts.

Natural invoke

  • "Prove template_code_project is reproducible before Zenodo"
  • "Numbers in the PDF don't match after a clean rebuild"
  • "Double-run the pipeline and diff outputs"

Inputs to confirm

Workflow

  1. Determinism — fixed RNG seeds, MPLBACKEND=Agg; no wall-clock/hostname/path leaks. List nondeterministic sources.

  2. Regenerate from clean — wipe working outputs, run core pipeline, regenerate manuscript variables. Capture exit status per stage.

  3. Diff — compare regenerated output/<name>/ and manuscript variables vs prose assertions. Hand-typed numbers not from generated variables are findings even if equal.

  4. Double-run stability — regenerate twice with clean tree between; any run-1 vs run-2 diff is hard failure.

  5. Fix — seed injection, variable-ize hard-typed numbers, remove timestamp leakage. Update projects/<n>/AGENTS.md and README.md with regeneration command. Never hand-edit output/.

Deliverables

  • Drift table: artifact | committed | regenerated | action.
  • Commands + raw output; no invented coverage numbers.

Verification commands

uv sync
uv run python scripts/runner/execute_pipeline.py --project <project> --core-only
uv run python projects/<project>/scripts/z_generate_manuscript_variables.py
git stash --include-untracked -- output/<project> 2>/dev/null || true
uv run python scripts/runner/execute_pipeline.py --project <project> --core-only
git status --porcelain output/<project>
uv run python scripts/pipeline/stage_01_test.py --project <project>
uv run python -m infrastructure.validation.cli prerender projects/<project>/manuscript --repo-root .
uv run python -m infrastructure.validation.cli pdf output/<project>/pdf/
uv run python -m infrastructure.validation.cli integrity output/<project>/

Read the full file on GitHub · 72 lines

Files

What ships with it

2 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 6d ago First seen · 72 lines · 70 tokens per session scan A 445b7c72d800

Subscribe to this mod's changes

template-reproducibility-audit is a skill published in the GitHub repository docxology/template (19 stars, last pushed today), licensed Apache-2.0. It adds 70 tokens to every session and 694 once invoked, about $0.0003 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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