computational research skills

103 tagged computational research, measured the same way as everything else here.

Browse within: LaTeX 56agents-md 56agentic-science 47agentic-search 47research-workflow 47scientific-computing 47

bioinformatics

01

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when working on bioinformatics workflows such as alignment, variant calling, phylogenetics, or protein-structure analysis, especially across BLAST, minimap2, samtools, bcftools, MAFFT, IQ-TREE, or ESMFold.

566 2d ago A 55 tokens original MIT

literature-review

02

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when the user wants to draft a literature review, survey a research area, summarize a field, organize workspace papers, identify gaps, or export review references.

566 2d ago A 36 tokens original MIT

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when evaluating, adding, or upgrading ScholarAIO support for a scientific computing tool, especially integration-gate review, official docs ingestion, toolref integration, lightweight skill design, and end-to-end CLI verification.

566 2d ago A 49 tokens original MIT

docxology/template

Skill Claude CodeCodex

Agentic-use and skill-routing workflow for the Research Project Template. USE WHEN discovering relevant skills, making template easier for agents to navigate, auditing docs/prompts skill coverage, checking .cursor/skillmanifest.json, evaluating external skills, reviewing external agentic operating models such as…

19 yesterday A 92 tokens original Apache-2.0

docxology/template

Skill Claude CodeCodex

Top-level skill for the research template infrastructure layer. Use in Cursor, Claude Code, or similar agents when editing or importing anything under infrastructure/, understanding the two-layer architecture, or wiring build/validation/rendering/publishing. Covers module discovery, import patterns, thin…

19 yesterday A 80 tokens original Apache-2.0

infrastructure-core

06

docxology/template

Skill Claude CodeCodex

Skill for the core infrastructure module providing logging, configuration, exception handling, progress tracking, checkpoints, retry logic, pipeline execution, performance monitoring, security, file operations, and multi-project orchestration. Use when setting up logging, loading config, handling errors, running…

19 yesterday A 62 tokens original Apache-2.0