Skill Claude CodeCodex
Use when working on bioinformatics workflows such as alignment, variant calling, phylogenetics, or protein-structure analysis, especially across BLAST, minimap2, samtools, bcftools, MAFFT, IQ-TREE, or ESMFold.
103 tagged computational research, measured the same way as everything else here.
Browse within: LaTeX 56agents-md 56agentic-science 47agentic-search 47research-workflow 47scientific-computing 47
Skill Claude CodeCodex
Use when working on bioinformatics workflows such as alignment, variant calling, phylogenetics, or protein-structure analysis, especially across BLAST, minimap2, samtools, bcftools, MAFFT, IQ-TREE, or ESMFold.
Skill Claude CodeCodex
Use when the user wants to draft a literature review, survey a research area, summarize a field, organize workspace papers, identify gaps, or export review references.
Skill Claude CodeCodex
Use when evaluating, adding, or upgrading ScholarAIO support for a scientific computing tool, especially integration-gate review, official docs ingestion, toolref integration, lightweight skill design, and end-to-end CLI verification.
Skill Claude CodeCodex
Agentic-use and skill-routing workflow for the Research Project Template. USE WHEN discovering relevant skills, making template easier for agents to navigate, auditing docs/prompts skill coverage, checking .cursor/skillmanifest.json, evaluating external skills, reviewing external agentic operating models such as…
Skill Claude CodeCodex
Top-level skill for the research template infrastructure layer. Use in Cursor, Claude Code, or similar agents when editing or importing anything under infrastructure/, understanding the two-layer architecture, or wiring build/validation/rendering/publishing. Covers module discovery, import patterns, thin…
Skill Claude CodeCodex
Skill for the core infrastructure module providing logging, configuration, exception handling, progress tracking, checkpoints, retry logic, pipeline execution, performance monitoring, security, file operations, and multi-project orchestration. Use when setting up logging, loading config, handling errors, running…