Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx agentmods add skills/flonat/flonat-research/bib-parsenpx skills add flonat/flonat-research --skill bib-parsegit clone --depth 1 https://github.com/flonat/flonat-researchWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/flonat/flonat-research/bib-parse)<a href="https://agentmods.dev/skills/flonat/flonat-research/bib-parse"><img src="https://agentmods.dev/badge/skills/flonat/flonat-research/bib-parse.svg" alt="Measured on agentmods" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5 | $0.00054 | $0.03743 |
| Opus 5 | $0.00027 | $0.01871 |
| Sonnet 5 | $0.00011 | $0.00749 |
| Haiku 4.5 | $0.00005 | $0.00374 |
Grade A, and why
bib-parse scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured yesterday.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 295 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Bibliography Parser — PDF to .bib
LIBRARY-FIRST RULE: ALWAYS check Paperpile membership by DOI (paperpile lookup-by-doi) for each parsed reference BEFORE generating new BibTeX entries. Topic/title search-library is a lossy discovery aid, NOT a membership test — never tag a reference NEW off a title-search miss. Reuse existing library entries instead of constructing from scratch. Enforced in Phase 2.3 per shared/reference-resolution.md § Membership Check.
Goal: given a PDF file, extract all cited references and produce a clean, validated .bib file.
When to Use
- You have a PDF (paper, report, thesis) and need a
.bibfile for its references - Importing references from a paper that doesn't have a companion
.bibfile - Reconstructing a bibliography from a document with embedded
\begin{thebibliography}or numbered references - Converting a reference list from any format into BibTeX
When NOT to Use
- You already have a
.bibfile and just need to validate it — use the configured bibliography validator - Finding new references on a topic — use an installed literature workflow or scholarly search
- The PDF is already in Paperpile — export via
paperpile export-bibinstead (faster, more accurate)
Input
A single PDF file path. The PDF should contain a bibliography, reference list, or works cited section.
Output
A .bib file, located by context:
- PDF inside a research project (e.g.
articles/,paper-*/, project root) — write to the same directory as the input PDF, namedreferences.bib(per project convention). Ifreferences.bibalready exists, ask before overwriting — offer to merge or use a different name (e.g.,extracted-refs.bib). - Standalone PDF (ad-hoc extraction with no project home — e.g. a client-managed upload) — write to
~/vault/parsed-bibs/<slug>.bib, where<slug>describes the source (e.g.kasberger-algorithmic-cooperation-geb-2026.bib). This is the standing location for one-off parses (established 2026-06-14). Create the folder if absent.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- yesterday First seen · 295 lines · 54 tokens per session scan A 9543a2e58aae
bib-parse is a skill published in the GitHub repository flonat/flonat-research (131 stars, last pushed 10d ago), licensed MIT. It adds 54 tokens to every session and 3,743 once invoked, about $0.0003 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.
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