Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add Hongda-Zhao/bio-gene-to-reference-tree --skill gene-tree-environment-routinggit clone --depth 1 https://github.com/Hongda-Zhao/bio-gene-to-reference-treeWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/hongda-zhao/bio-gene-to-reference-tree/gene-tree-environment-routing)<a href="https://agentmods.dev/skills/hongda-zhao/bio-gene-to-reference-tree/gene-tree-environment-routing"><img src="https://agentmods.dev/badge/skills/hongda-zhao/bio-gene-to-reference-tree/gene-tree-environment-routing/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/hongda-zhao/bio-gene-to-reference-tree/gene-tree-environment-routing"><img src="https://agentmods.dev/badge/skills/hongda-zhao/bio-gene-to-reference-tree/gene-tree-environment-routing.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00049 | $0.00223 |
| Opus 5 | $0.00024 | $0.00112 |
| Sonnet 5 | $0.00010 | $0.00045 |
| Haiku 4.5 | $0.00005 | $0.00022 |
Grade A, and why
gene-tree-environment-routing scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 12d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
What it actually says
Gene-Tree Environment Routing
This is a sidecar adapter: it selects where approved work can run, not what the biological analysis should claim.
- Read the canonical Skill and workflow gates.
- Follow environment and software routing.
- Open tool routing before a live lookup, remote submission, external executable, or database choice.
- Return the capability snapshot, route decision, missing dependencies, and handoff boundary to the active scientific task.
Return the linked routing outputs to whichever scientific task is active.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 12d ago First seen · 16 lines · 49 tokens per session scan A bdc035a8e90d
gene-tree-environment-routing is a skill published in the GitHub repository Hongda-Zhao/bio-gene-to-reference-tree (4 stars, last pushed 18d ago), licensed MIT. It adds 49 tokens to every session and 223 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.
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