topicmodels

topicmodels is a skill for Claude Code, Codex from LeoLin990405/r-analytics-skill. It costs 25 tokens per session (1,065 once invoked), scanned A, original, MIT.

An R package for topic modeling, which finds recurring themes in document collections, using methods such as LDA and CTM.

In plain words
What is it for?
Use it to build document-term matrices, fit topic models, and extract topic words and topic probabilities for documents.
Why use it?
It helps analyze the main themes in many documents without assigning every document to a category by hand.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Good fit Use it to build document-term matrices, fit topic models, and extract topic words and topic probabilities for documents.

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Install with agentmods
npx agentmods add skills/leolin990405/r-analytics-skill/topicmodels
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add LeoLin990405/r-analytics-skill --skill topicmodels
Clone the repo
git clone --depth 1 https://github.com/LeoLin990405/r-analytics-skill

Made for: Claude Code, Codex.

Wrote this? Show the measurements

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README.md
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Per session 25 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,065 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00025 $0.01065
Opus 5 $0.00013 $0.00532
Sonnet 5 $0.00005 $0.00213
Haiku 4.5 $0.00003 $0.00106

Measured 9d ago against content hash a70bc52a8e41, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

topicmodels scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

sub-skills/r-nlp/r-nlp-topic/topicmodels/SKILL.md · 189 lines

How it starts

The opening of the file, as written. The whole thing — 189 lines — stays where its author put it; the contents beside it link to each section on GitHub.

topicmodels

Topic models for text analysis.

LDA (Latent Dirichlet Allocation)

library(topicmodels)
library(tm)

# Create document-term matrix
corpus <- Corpus(VectorSource(texts))
dtm <- DocumentTermMatrix(corpus)

# Fit LDA
lda_model <- LDA(dtm, k = 5)  # 5 topics

LDA Parameters

lda_model <- LDA(
  dtm,
  k = 5,                    # Number of topics
  method = "Gibbs",         # "VEM" or "Gibbs"
  control = list(
    seed = 123,             # For reproducibility
    burnin = 1000,          # Gibbs: burn-in iterations
    iter = 2000,            # Gibbs: sampling iterations
    thin = 100,             # Gibbs: thinning interval
    alpha = 0.1,            # Document-topic prior
    delta = 0.1             # Topic-word prior (VEM only)
  )
)

Extract Results

# Top terms per topic
terms(lda_model, 10)

# Topic probabilities for documents
topics(lda_model)

# Full posterior
posterior(lda_model)

# Beta (topic-word distribution)
beta <- posterior(lda_model)$terms

# Gamma (document-topic distribution)
gamma <- posterior(lda_model)$topics

CTM (Correlated Topic Model)

# Fit CTM
ctm_model <- CTM(dtm, k = 5)

# CTM allows topic correlations
# Extract correlation matrix
ctm_model@Sigma

Model Selection

# Perplexity for different k values
perplexities <- sapply(2:10, function(k) {
  model <- LDA(dtm, k = k, control = list(seed = 123))
  perplexity(model)
})

# Plot
plot(2:10, perplexities, type = "b",
     xlab = "Number of Topics", ylab = "Perplexity")

# Choose k with lowest perplexity or elbow

Cross-Validation

# Split data
train_idx <- sample(nrow(dtm), 0.8 * nrow(dtm))
train_dtm <- dtm[train_idx, ]
test_dtm <- dtm[-train_idx, ]

# Fit on training
model <- LDA(train_dtm, k = 5)

# Evaluate on test
perplexity(model, newdata = test_dtm)

Visualization

library(tidytext)
library(ggplot2)

# Tidy format
topics_tidy <- tidy(lda_model, matrix = "beta")

# Top terms per topic
top_terms <- topics_tidy %>%
  group_by(topic) %>%
  top_n(10, beta) %>%
  ungroup()

# Plot
ggplot(top_terms, aes(reorder(term, beta), beta, fill = factor(topic))) +
  geom_col(show.legend = FALSE) +
  facet_wrap(~ topic, scales = "free") +
  coord_flip()

Read the full file on GitHub · 189 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 9d ago First seen · 189 lines · 25 tokens per session scan A a70bc52a8e41

Subscribe to this mod's changes

topicmodels is a skill published in the GitHub repository LeoLin990405/r-analytics-skill (5 stars, last pushed 6mo ago), licensed MIT. It adds 25 tokens to every session and 1,065 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.

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