Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add LeoLin990405/r-analytics-skill --skill topicmodelsgit clone --depth 1 https://github.com/LeoLin990405/r-analytics-skillWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/leolin990405/r-analytics-skill/topicmodels)<a href="https://agentmods.dev/skills/leolin990405/r-analytics-skill/topicmodels"><img src="https://agentmods.dev/badge/skills/leolin990405/r-analytics-skill/topicmodels/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/leolin990405/r-analytics-skill/topicmodels"><img src="https://agentmods.dev/badge/skills/leolin990405/r-analytics-skill/topicmodels.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00025 | $0.01065 |
| Opus 5 | $0.00013 | $0.00532 |
| Sonnet 5 | $0.00005 | $0.00213 |
| Haiku 4.5 | $0.00003 | $0.00106 |
Grade A, and why
topicmodels scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 189 lines — stays where its author put it; the contents beside it link to each section on GitHub.
topicmodels
Topic models for text analysis.
LDA (Latent Dirichlet Allocation)
library(topicmodels)
library(tm)
# Create document-term matrix
corpus <- Corpus(VectorSource(texts))
dtm <- DocumentTermMatrix(corpus)
# Fit LDA
lda_model <- LDA(dtm, k = 5) # 5 topics
LDA Parameters
lda_model <- LDA(
dtm,
k = 5, # Number of topics
method = "Gibbs", # "VEM" or "Gibbs"
control = list(
seed = 123, # For reproducibility
burnin = 1000, # Gibbs: burn-in iterations
iter = 2000, # Gibbs: sampling iterations
thin = 100, # Gibbs: thinning interval
alpha = 0.1, # Document-topic prior
delta = 0.1 # Topic-word prior (VEM only)
)
)
Extract Results
# Top terms per topic
terms(lda_model, 10)
# Topic probabilities for documents
topics(lda_model)
# Full posterior
posterior(lda_model)
# Beta (topic-word distribution)
beta <- posterior(lda_model)$terms
# Gamma (document-topic distribution)
gamma <- posterior(lda_model)$topics
CTM (Correlated Topic Model)
# Fit CTM
ctm_model <- CTM(dtm, k = 5)
# CTM allows topic correlations
# Extract correlation matrix
ctm_model@Sigma
Model Selection
# Perplexity for different k values
perplexities <- sapply(2:10, function(k) {
model <- LDA(dtm, k = k, control = list(seed = 123))
perplexity(model)
})
# Plot
plot(2:10, perplexities, type = "b",
xlab = "Number of Topics", ylab = "Perplexity")
# Choose k with lowest perplexity or elbow
Cross-Validation
# Split data
train_idx <- sample(nrow(dtm), 0.8 * nrow(dtm))
train_dtm <- dtm[train_idx, ]
test_dtm <- dtm[-train_idx, ]
# Fit on training
model <- LDA(train_dtm, k = 5)
# Evaluate on test
perplexity(model, newdata = test_dtm)
Visualization
library(tidytext)
library(ggplot2)
# Tidy format
topics_tidy <- tidy(lda_model, matrix = "beta")
# Top terms per topic
top_terms <- topics_tidy %>%
group_by(topic) %>%
top_n(10, beta) %>%
ungroup()
# Plot
ggplot(top_terms, aes(reorder(term, beta), beta, fill = factor(topic))) +
geom_col(show.legend = FALSE) +
facet_wrap(~ topic, scales = "free") +
coord_flip()
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 9d ago First seen · 189 lines · 25 tokens per session scan A a70bc52a8e41
topicmodels is a skill published in the GitHub repository LeoLin990405/r-analytics-skill (5 stars, last pushed 6mo ago), licensed MIT. It adds 25 tokens to every session and 1,065 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.
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