Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add LeonChaoX/qinyan-academic-skills --skill pytdcgit clone --depth 1 https://github.com/LeonChaoX/qinyan-academic-skillsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/leonchaox/qinyan-academic-skills/pytdc)<a href="https://agentmods.dev/skills/leonchaox/qinyan-academic-skills/pytdc"><img src="https://agentmods.dev/badge/skills/leonchaox/qinyan-academic-skills/pytdc/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/leonchaox/qinyan-academic-skills/pytdc"><img src="https://agentmods.dev/badge/skills/leonchaox/qinyan-academic-skills/pytdc.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00041 | $0.03094 |
| Opus 5.5 | $0.00016 | $0.01238 |
| Sonnet 5.5 | $0.00008 | $0.00619 |
| Haiku 4.5 | $0.00004 | $0.00309 |
Grade A, and why
pytdc scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
This is a copy
94% identical to pytdc — 7 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.
How it starts
The opening of the file, as written. The whole thing — 459 lines — stays where its author put it; the contents beside it link to each section on GitHub.
PyTDC (Therapeutics Data Commons)
Overview
PyTDC is an open-science platform providing AI-ready datasets and benchmarks for drug discovery and development. Access curated datasets spanning the entire therapeutics pipeline with standardized evaluation metrics and meaningful data splits, organized into three categories: single-instance prediction (molecular/protein properties), multi-instance prediction (drug-target interactions, DDI), and generation (molecule generation, retrosynthesis).
When to Use This Skill
This skill should be used when:
- Working with drug discovery or therapeutic ML datasets
- Benchmarking machine learning models on standardized pharmaceutical tasks
- Predicting molecular properties (ADME, toxicity, bioactivity)
- Predicting drug-target or drug-drug interactions
- Generating novel molecules with desired properties
- Accessing curated datasets with proper train/test splits (scaffold, cold-split)
- Using molecular oracles for property optimization
Installation & Setup
Install PyTDC using pip:
uv pip install PyTDC
To upgrade to the latest version:
uv pip install PyTDC --upgrade
Core dependencies (automatically installed):
- numpy, pandas, tqdm, seaborn, scikit_learn, fuzzywuzzy
Additional packages are installed automatically as needed for specific features.
Quick Start
The basic pattern for accessing any TDC dataset follows this structure:
from tdc.<problem> import <Task>
data = <Task>(name='<Dataset>')
split = data.get_split(method='scaffold', seed=1, frac=[0.7, 0.1, 0.2])
df = data.get_data(format='df')
Where:
<problem>: One ofsingle_pred,multi_pred, orgeneration<Task>: Specific task category (e.g., ADME, DTI, MolGen)<Dataset>: Dataset name within that task
Example - Loading ADME data:
from tdc.single_pred import ADME
data = ADME(name='Caco2_Wang')
split = data.get_split(method='scaffold')
# Returns dict with 'train', 'valid', 'test' DataFrames
What ships with it
6 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 1mo ago First seen · 459 lines · 41 tokens per session scan A 23defb7c98e3
pytdc is a skill published in the GitHub repository LeonChaoX/qinyan-academic-skills (980 stars, last pushed 3mo ago), licensed MIT. It adds 41 tokens to every session and 3,094 once invoked, about $0.0002 per session on Opus 5.5. A static security scan graded it A with 0 findings. It is 94% identical to pytdc, differing in 7 lines, and is treated as a copy.
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model-scaffold
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radiomics-ml
Use when building or auditing a radiomics or tabular clinical-ML prediction model with a classical learner (LASSO, SVM, random forest, XGBoost and similar). Enforces nested CV, dimensionality control, in-fold feature selection, feature stability, calibration and external validation.
imaging-data
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model-selection
Use when choosing the model for a medical-imaging study. Picks a paper-grounded architecture family (CNN/ViT, U-Net/nnU-Net, detection, SAM/foundation, GNN), then vets the concrete repo or checkpoint for licence, version pin, weight provenance and benchmark overlap.