A ready-to-fork Claude Code template for academics using LaTeX/Beamer + R. Multi-agent review, quality gates, adversarial QA, and replication protocols.
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Turn an incoming set of findings — from an AI reviewer, a referee report, a code review, a linter, or a second model — into verified fixes, without letting a confident misread damage correct work. Every finding is a CANDIDATE until checked against the actual source. Use whenever you receive review comments, audit…
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Enforce the replication-protocol.md rule by cross-checking numeric claims in a manuscript against the actual R / Stata / Python outputs. Report PASS/FAIL per claim against tolerance thresholds. Use before submission and before releasing a replication package.
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Before and after changing anything shared — a function's return value, a signature, a schema, a label set, a config default, a constant, a file format — find every consumer and actually run them. Catches the change that looks purely additive but silently breaks a contract in a file you never opened. Use when editing…
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Snapshot the computational environment for a replication package — detects the analysis stack (R / Stata / Python) and emits the right lockfiles (renv.lock + sessionInfo.txt, requirements.txt / environment.yml / uv.lock, Stata version + ado package list), records seeds and RNG kind, optionally writes a pinning…
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Stress-test a finding against the choices you did not make. Enumerates the discrete forks a competent analyst could have taken (measure definition, sample filter, control set, clustering level, weighting, functional form), runs the specification grid, and reports the distribution rather than a point estimate — then…
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Save a structured state snapshot before stopping or handing off. Captures the active plan, recent decisions, file pointers (with line numbers), open questions, and the next 1–3 actions into a checkpoint file under qualityreports/checkpoints/. Optionally proposes [LEARN] entries to add to MEMORY.md. Use when user says…
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Generate a co-author / collaborator handoff brief for a multi-author, multi-machine project — summarizing what changed since the last brief (git delta), the current state of each artifact (manuscript, analysis, slides), open questions, how to reproduce locally, and any restricted-data access steps. Use when user says…
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Stage, commit, push, open a PR, and merge to main. Use ONLY on explicit commit intent — user says "commit", "ship it", "push this", "open a PR", "merge to main", "let's commit this", or prefixes with /commit. Do NOT auto-invoke on vague end-of-task phrases ("we're done", "wrap up") — those require explicit…
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Compile a Beamer LaTeX slide deck with XeLaTeX (3 passes + bibtex). Use when user says "compile", "build the slides", "rebuild the PDF", "run latex", "render the tex", or asks why a .tex file isn't producing a PDF. Operates on Slides/.tex.
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Distill the current conversation into a structured note (decisions made, open questions, file pointers with line numbers, next 1–3 actions) and save to qualityreports/sessionlogs/ before auto-compression. Differs from /checkpoint (explicit stop-point snapshot) and from auto-compaction (which truncates rather than…
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Show current context status and session health. Use to check how much context has been used, whether auto-compact is approaching, and what state will be preserved.
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Create a new Beamer lecture .tex from source papers and materials, with notation consistency checks and the project's preamble wired in. Use when user says "create a lecture on X", "new lecture from these papers", "start a deck on topic Y", "scaffold a new Beamer file", "build me a lecture from these PDFs". Scaffolds…
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Research-brief + claim-record discipline for delegated or AI-assisted research work. Use when starting any substantive research task or long autonomous run (write the brief first), and when reporting results that will support a claim in a paper or decision (produce the claim record). Keeps faster execution from being…
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
End-to-end R data analysis pipeline — exploration → cleaning → regression → publication-ready tables and figures. Use when user says "analyze this dataset", "run a regression on X", "explore this CSV", "full analysis workflow", "get me summary stats and a regression", or points at a .csv/.rds/.dta and asks for…
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Draft a funder-compliant Data Management Plan (NSF DMP, NIH DMS Policy 2023, ERC, Horizon Europe) by composing the confidential-data and environment-capture primitives. Sections cover data description, formats/metadata, storage/backup, access/sharing, preservation/archiving, and roles. Use when user says "data…
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Comprehensive adversarial audit of a theory, proof, math/econ paper, codebase, or set of claims — decompose into components, fan out independent skeptics that must return CONCRETE defects, adjudicate every finding with a separate judge, fix all confirmed defects, then re-verify. Use when correctness must be…
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Render Quarto .qmd slides to HTML and sync to docs/ for GitHub Pages. Use when user says "deploy", "publish the slides", "ship to pages", "push the lecture live", "render and publish", or after Quarto edits that need to go public. NOT for local Quarto render only — use quarto render directly for that.
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Adversarial 5-7 question challenge to a deck's pedagogical choices — ordering, prerequisites, cognitive load, motivation. Use when user says "devil's advocate", "poke holes in this deck", "push back on my slides", "stress-test the design", "what would a skeptical student ask?". Read-only; surfaces questions to force…
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Root-cause a failing or wrong empirical result with a disciplined reproduce → minimise → hypothesise → instrument → fix loop, instead of guessing-and-poking. Use when the user says "why is my regression wrong", "this number changed", "my script errors out", "the result won't reproduce", "debug this", "this estimate…
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Compare two implementations of the same thing — a port (R↔Python↔Stata), a reimplementation, a replication package, a refactor, or a new version against the old — so that agreement means something. Freeze inputs first, inventory every expected output, test the comparator itself, compare every channel (not just the…
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Pre-screen analysis outputs (tables, figures, logs) built on restricted or confidential data for statistical-disclosure-limitation problems before any release. Scans for small cell counts, complementary-suppression gaps, dominance (p-percent / (n,k)), re-identifiable exact counts, PII leakage, and unrounded sensitive…
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Extract TikZ diagrams from Beamer .tex source, compile each to a standalone PDF, and convert to SVG with 0-based indexing. Use when user says "extract the tikz", "regenerate the diagrams", "rebuild the SVGs", "sync tikz to quarto", or after editing TikZ blocks in a Beamer deck that also has a Quarto mirror.
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Scaffold a research grant proposal (NSF, NIH, ERC, or foundation) by composing existing primitives — pulls identification strategy from an /interview-me spec, delegates the data-management plan to /data-management-plan and the facilities statement to /capture-environment, and emits a funder-requirements checklist. Use…
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Read-only audit of .tex, .qmd, or .md text for AI-voice tells — boilerplate transitions ("Moreover", "Furthermore", "It is important to note that"), AI-cliché lexicon ("delve", "navigate the complexities", "tapestry", "robust framework"), em-dash overuse, symmetric paragraph shapes, tricolon abuse, hedging stacking…
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: