claude-code-my-workflow is a forkable setup for using Claude Code to produce and review academic papers, slides, data analyses, and replication packages. Researchers use its agents, skills, rules, hooks, and quality checks to coordinate these tasks and verify their results. The catalogue entries define the reusable workflow components for Claude Code.
Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add pedrohcgs/claude-code-my-workflow --skill teach-from-papergit clone --depth 1 https://github.com/pedrohcgs/claude-code-my-workflowWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/pedrohcgs/claude-code-my-workflow/teach-from-paper)<a href="https://agentmods.dev/skills/pedrohcgs/claude-code-my-workflow/teach-from-paper"><img src="https://agentmods.dev/badge/skills/pedrohcgs/claude-code-my-workflow/teach-from-paper/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/pedrohcgs/claude-code-my-workflow/teach-from-paper"><img src="https://agentmods.dev/badge/skills/pedrohcgs/claude-code-my-workflow/teach-from-paper.svg" alt="Reviewed on agentmods" width="80" height="20"></a>- NVIDIA SkillSpector warn
SkillSpector: 3 findings, up to medium
These are SkillSpector’s own severities. On a checked sample its high-severity flags on skills were ~96% false positives — a documented command, a public API, a “never do X” rule — so we show them as a caution to read, not a verdict. Why →
- medium Agent Snooping · line 106 Skill enumerates or reads other installed skills. Access to other skills' SKILL.md files or the skills directory reveals prompt instructions, capabilities, and secrets that should be invisible to peer skills.Fix: Remove all code or instructions that list or read other skills' files or directories. Skills should operate independently; cross-skill access is a privilege escalation.
- medium Agent Snooping · line 107 Skill enumerates or reads other installed skills. Access to other skills' SKILL.md files or the skills directory reveals prompt instructions, capabilities, and secrets that should be invisible to peer skills.Fix: Remove all code or instructions that list or read other skills' files or directories. Skills should operate independently; cross-skill access is a privilege escalation.
- medium Agent Snooping · line 108 Skill enumerates or reads other installed skills. Access to other skills' SKILL.md files or the skills directory reveals prompt instructions, capabilities, and secrets that should be invisible to peer skills.Fix: Remove all code or instructions that list or read other skills' files or directories. Skills should operate independently; cross-skill access is a privilege escalation.
What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00102 | $0.01751 |
| Opus 5 | $0.00051 | $0.00875 |
| Sonnet 5 | $0.00020 | $0.00350 |
| Haiku 4.5 | $0.00010 | $0.00175 |
Grade A, and why
teach-from-paper scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 117 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Teach From Paper
Convert one research paper into a ready-to-build teaching package: a lecture outline, a shortlist of teachable results with the intuition spelled out, a slide skeleton, discussion questions, and an exercise brief. The deliverable is an outline and a brief — not a finished deck; the slide skeleton is shaped to hand straight to /create-lecture, and the exercise brief to /scaffold-exercises.
When to use
- You have a paper (PDF,
.tex,.md) and a slot to teach it — a lecture, a reading group, a job-market practice talk. - You want the teachable core extracted and pitched to a level, not a generic summary.
- You're prepping the plan for a deck and want
/create-lectureto do the drafting.
Not for: literature surveys across many papers (use /lit-review); refereeing the paper's correctness (use /review-paper); drafting the actual Beamer slides (use /create-lecture).
Inputs
$0— path to the paper.
| Format | How to read it |
|---|---|
.tex, .qmd, .md, .txt |
Read directly with the Read tool. |
.pdf |
TMP=$(mktemp -t paper).txt && pdftotext "$0" "$TMP" (poppler-utils), then Read/Grep "$TMP". |
If extraction fails or the tool is missing, ask the user for a plain-text version and stop. The full paper goes in the context window (1M) — read it end-to-end before extracting; do not skim the abstract and guess.
Phases
Phase 0: Read the Paper + Set Audience Level (Pre-Flight Report)
Read the paper start to finish. Then resolve the audience level and time budget — from --level / --minutes if given, otherwise ask once. Echo a Pre-Flight Report before extracting:
## Pre-Flight Report
**Paper:** [title, authors, year]
**One-line thesis:** [the paper's central claim in your words]
**Audience level:** undergrad | phd | seminar (drives notation depth + which proofs survive)
**Time budget:** N minutes (~N/2 slides)
**Prerequisites assumed:** [concepts students must already have]
**Running example candidate:** [the paper's application that can thread the lecture]
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 5d ago First seen · 117 lines · 102 tokens per session scan A 484374933e8d
teach-from-paper is a skill published in the GitHub repository pedrohcgs/claude-code-my-workflow (1,569 stars, last pushed 15d ago), licensed MIT. It adds 102 tokens to every session and 1,751 once invoked, about $0.0005 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.
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