Nature Skills is a collection of reusable skills that help AI agents handle academic writing and scientific visualization. Researchers and AI-assisted scholars use it to turn research tasks into repeatable workflows and usable outputs. The catalogue entries are skills from this collection.
Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add Yuan1z0825/nature-skills --skill nature-literature-pipelinegit clone --depth 1 https://github.com/Yuan1z0825/nature-skillsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/yuan1z0825/nature-skills/nature-literature-pipeline)<a href="https://agentmods.dev/skills/yuan1z0825/nature-skills/nature-literature-pipeline"><img src="https://agentmods.dev/badge/skills/yuan1z0825/nature-skills/nature-literature-pipeline/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/yuan1z0825/nature-skills/nature-literature-pipeline"><img src="https://agentmods.dev/badge/skills/yuan1z0825/nature-skills/nature-literature-pipeline.svg" alt="Reviewed on agentmods" width="80" height="20"></a>- Socket pass
- Snyk warn
- NVIDIA SkillSpector pass
What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00053 | $0.01126 |
| Opus 5.5 | $0.00021 | $0.00450 |
| Sonnet 5.5 | $0.00011 | $0.00225 |
| Haiku 4.5 | $0.00005 | $0.00113 |
Grade A, and why
nature-literature-pipeline scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
Copies of this mod
1 near-identical copy found in the catalogue:
- nature-literature-pipeline — 91% identical, 3 lines differ
How it starts
The opening of the file, as written. The whole thing — 113 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Nature Literature Pipeline
A complete, production-tested automated literature pipeline. Not just "search for papers" — it's a structured engine that scores, classifies, reads, delivers, and archives research papers daily.
What It Does
Cron (daily trigger, e.g. 08:30)
│
├─ ① SEARCH (30 candidates)
│ arXiv / OpenAlex / Crossref / Semantic Scholar (auto-degradation)
│
├─ ② COARSE FILTER (30 → 5)
│ Six-dimension scoring: topic match × 35 + methodology × 20
│ + journal quality × 15 + network relevance × 10
│ + applied value × 10 + archival value × 10
│
├─ ③ FINE READ (top 5)
│ Abstract-level or full-text. Source level tagged:
│ Full-text / Abstract only / Metadata only
│
├─ ④ DELIVER
│ Formatted digest to Feishu/Telegram/etc.
│ 🏅 rank | title | journal | ⭐ score | 💡 one-liner
│ 🔬 methods | 📊 key results | 🧭 commentary
│
└─ ⑤ ARCHIVE
DOI/arXiv de-dup → classify → write notes → update index
Quick Start
After installing, tell your agent:
My research area is [X], keywords: [Y], deliver to [feishu group name], archive to [path]
The agent will configure keywords, delivery target, and archive path automatically.
Then set up a daily cron job:
Set up a daily literature push at 08:30 Beijing time, 30 candidates, top 5 delivered
Architecture
The skill is organized in two layers:
| Layer | Purpose | Files |
|---|---|---|
| Engine | Scoring, classification, note templates, gap analysis | references/scoring-system.md, references/gap-analysis.md, references/note-template.md |
| Application | Daily cron pipeline, delivery formatting, archival workflow | references/push-format.md, references/cron-setup.md, references/review-compilation-workflow.md |
Configuration
All domain-specific content is configurable:
- Keywords — your research keywords (English + Chinese)
- Scoring weights — adjust the six dimensions for your field
- Classification rules — define your own tier system (A-E or custom)
- Delivery target — Feishu group, Telegram channel, email, etc.
- Archive path — local vault/wiki directory
What ships with it
11 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
- agents/openai.yaml 273 B
- manifest.yaml 1.7 KB
- README_EN.md 2.3 KB
- README.md 2.1 KB
- references/cron-setup.md 2.8 KB
- references/gap-analysis.md 2.4 KB
- references/note-template.md 4.7 KB
- references/push-format.md 3.4 KB
- references/review-compilation-workflow.md 4.5 KB
- references/scoring-system.md 2.4 KB
- templates/literature-push-template.md 4.9 KB
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 1mo ago First seen · 113 lines · 53 tokens per session scan A 1dcaa692457e
nature-literature-pipeline is a skill published in the GitHub repository Yuan1z0825/nature-skills (50,803 stars, last pushed 2d ago), licensed Apache-2.0. It adds 53 tokens to every session and 1,126 once invoked, about $0.0002 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
Other skills, from other repositories
literature-searcher
Search CrossRef, OpenAlex, PubMed, Semantic Scholar, and optional Scopus; deduplicate results, download open-access PDFs by DOI, classify papers, monitor new results, and analyze coverage. Use when asked to search literature, monitor a topic, download an open-access paper, classify papers, or analyze literature gaps.
matlab-orchestrator
MATLAB agentic workflow router. Use this whenever the user asks for MATLAB, Simulink, .m/.mlx/.slx work, toolbox-driven engineering, paper reproduction, simulation, code generation, data analysis, control, robotics, signal/image/AI workflows, or wants an end-to-end automated MATLAB task with validation. For Simulink…
matlab-runner
Run MATLAB tasks from Codex with reliable MCP-based execution, logs, artifacts, toolbox inventory, smoke tests, and reproducible validation. Use whenever MATLAB code, .m/.mlx scripts, MATLAB tests, local toolbox probing, or command-line automation is needed.
matlab-simulink-modeling
MATLAB and Simulink workflow for creating, inspecting, modifying, simulating, validating, and exporting .slx models. Use for Simulink, Stateflow, Simscape, model-based design, parameter sweeps, signal logging, requirements, and simulation automation. On this machine, Simulink tasks should be visual-first: open the…
manim-animator
Create code-driven explanatory animations and precise vector graphics with Manim, optionally using SandBase for generated images, narration, music, or transcription. Use for mathematical, scientific, algorithmic, or diagrammatic animation; use a video-generation workflow for photoreal footage.
matlab-robotics-autonomy
MATLAB robotics and autonomy workflow for ROS Toolbox, Robotics System Toolbox, Navigation Toolbox, UAV Toolbox, sensor fusion, trajectory planning, simulation, and reproducible robot experiments. Use for ROS/ROS 2 bags, robot models, path planning, SLAM, state estimation, and autonomy prototyping.