Scientific instructions files

508 tagged Scientific, measured the same way as everything else here.

Browse within: bioinformatics 28model-context-protocol 15machine-learning 13cyanheads 12genomics 11drug-discovery 9Cheminformatics 7academic-writing 7ai-tools 7LaTeX 6astronomy 6claude-plugin 6ai-research 5calculator 5

SachinGawande2003/Heuris-BioMCP

Instructions file Claude Code

Claude Code instructions for SachinGawande2003/Heuris-BioMCP, covering heuris-biomcp agent guidance, what this server is for, recommended workflows, literature and mechanism grounding and translational gene review.

not rated 1 5mo ago A 988 tokens original MIT

feordin/nih-umls-mcp

Instructions file Claude Code

Claude Code instructions for feordin/nih-umls-mcp, covering claude.md, project overview, build & development commands, install in development mode and install with dev dependencies (pytest).

not rated 1 4mo ago A 629 tokens original MIT

dna-seq/just-prs-mcp

Instructions file CodexOpenCode

AGENTS.md instructions for dna-seq/just-prs-mcp, covering agents.md, what this is, pre-configured test genomes, quick play for agents and commands (prefer these).

not rated 1 20d ago A 3,927 tokens original MIT

florianbuetow/arxiv-smart-mcp

Instructions file CodexOpenCode

AGENTS.md instructions for florianbuetow/arxiv-smart-mcp, covering development rules for arxivsmart, general coding principles, git commit guidelines, testing and python execution rules.

not rated 1 6mo ago A 653 tokens original MIT

Proprius-Labs/pocketscout-mcp

Instructions file Claude Code

Claude Code instructions for Proprius-Labs/pocketscout-mcp, covering pocketscout mcp, what this is, who this is for, design philosophy and architecture.

not rated 1 2mo ago A 1,775 tokens original MIT

learningtour/chat-with-audio

Instructions file Claude Code

Claude Code instructions for learningtour/chat-with-audio, covering chat with audio — development notes, commands, architecture map and pitfalls.

not rated 1 1mo ago A 1,635 tokens original MIT

JulieElkinsAWS/psychometrics-mcp

Instructions file Claude Code

Claude Code instructions for JulieElkinsAWS/psychometrics-mcp, covering psychometrics-mcp, status (pre-alpha), environment (this bites immediately), known gaps -- real work, not stale references and design principles -- preserve these, don't relitigate them.

not rated 1 7d ago A 6,023 tokens

cyanheads/uniprot-mcp-server

Instructions file Claude CodeCodexOpenCode

AGENTS.md instructions for cyanheads/uniprot-mcp-server, covering developer protocol, what's next?, core rules, patterns and tool.

not rated 1 6d ago A 6,531 tokens copy · 81% Apache-2.0

vahtian CLAUDE.md

323

heidihelena/vahtian

Instructions file Claude Code

Claude Code instructions for heidihelena/vahtian, covering vahtian — repo guide for claude, the invariant (applies to every edit, every session), which skill for what and hard floor (even when no skill fires).

not rated 1 1mo ago A 1,039 tokens original Apache-2.0

zamushwani/biomedical-ai-skills

Instructions file CodexOpenCode

AGENTS.md instructions for zamushwani/biomedical-ai-skills, covering agents.md, using a skill, working in this repository, commands and layout.

not rated 1 6d ago A 915 tokens original MIT

aliildan/cochrane-mcp

Instructions file Claude Code

Claude Code instructions for aliildan/cochrane-mcp, covering claude.md, what this is, ⚠️ the one thing you must understand: cloudflare, architecture and cochrane api facts (verified).

not rated 1 2mo ago C 2,384 tokens original MIT

MOBAI547800/abaqus-codex-mcp

Instructions file CodexOpenCode

AGENTS.md instructions for MOBAI547800/abaqus-codex-mcp, covering repository guidance, scope, required checks and safety rules.

not rated 0 1mo ago A 343 tokens original MIT

colbyw5/openfda-mcp-server

Instructions file CodexOpenCode

AGENTS.md instructions for colbyw5/openfda-mcp-server, covering agents.md, running the server, or, once installed, dev commands and layout.

not rated 0 1mo ago A 467 tokens original MIT

qgis_mcp CLAUDE.md

330

awheeler262/qgis_mcp

Instructions file Claude Code

Claude Code instructions for awheeler262/qgis_mcp, covering claude.md, project overview, commands, architecture and qgis-mcp dependency.

not rated 0 14d ago A 1,635 tokens

sandraschi/leanforge-mcp

Instructions file CodexOpenCode

AGENTS.md instructions for sandraschi/leanforge-mcp, covering agents.md -- leanforge-mcp, stack, repo layout, critical rules and lean subprocess.

not rated 0 5d ago A 1,078 tokens original MIT

arXiv-mcp AGENTS.md

332

shoumikdc/arXiv-mcp

Instructions file CodexOpenCode

AGENTS.md instructions for shoumikdc/arXiv-mcp, covering agents.md, what's included, quick start commands, run development server (streamable http on port 8081) and run production server (optimized for deployment).

not rated 0 11mo ago A 4,099 tokens

KozakHou/project-bourne

Instructions file CodexOpenCode

AGENTS.md instructions for KozakHou/project-bourne, covering project bourne — agent instructions, project identity, core product principle, mental model and non-negotiable rules.

not rated 0 7d ago A 3,694 tokens original Apache-2.0

huangzesen/xhelio-spice

Instructions file Claude Code

Claude Code instructions for huangzesen/xhelio-spice, covering claude.md — xhelio-spice, what this is, repository structure, key design decisions and kernel url sources (verified mar 2026).

not rated 0 2mo ago A 2,561 tokens original MIT

islobodan/cruncher-mcp

Instructions file CodexOpenCode

AGENTS.md instructions for islobodan/cruncher-mcp, covering agent instructions for cruncher (mcp server), server overview, 1. prioritize evaluateexpression for math, supported in expression strings and examples.

not rated 0 2mo ago A 1,968 tokens original MIT

cite-guard CLAUDE.md

336

lonexreb/cite-guard

Instructions file Claude Code

Claude Code instructions for lonexreb/cite-guard, covering claude.md — citeguard, what this project is, non-negotiable design constraints, data sources and repository layout.

not rated 0 1mo ago A 1,260 tokens original MIT