Scientific instructions files

cyanheads/pubchem-mcp-server

Instructions file

Instructions for cyanheads/pubchem-mcp-server, covering developer protocol, what's next?, core rules, patterns and tool.

quattro/jax-numerics-agent

Instructions file CodexOpenCode

Instructions for quattro/jax-numerics-agent, covering agents.md, scope, source of truth, agent workflow and global install note.

huangzhonglv/hep-workflow

Instructions file CodexOpenCode

Instructions for huangzhonglv/hep-workflow, covering hep-workflow, project, common commands, project-level contracts (load-bearing) and architecture (quick-glance).

YuliaNuzhnenko/bioinformatics-agent-skills

Instructions file CodexOpenCode

Instructions for YuliaNuzhnenko/bioinformatics-agent-skills, covering agent integration & specification guide 🤖, 📌 supported agent host architectures, 🧪 skill frontmatter specification and 🔒 security & sandboxing.

Utolaris/Stata-CLI

Instructions file CodexOpenCode

Instructions for Utolaris/Stata-CLI, covering agents.md, project structure and working rules.

vlln/pdffigures-mcp-server

Instructions file

Instructions for vlln/pdffigures-mcp-server, covering claude.md, architecture, commands, build and run with docker and run locally (requires pdffigures2 jar at the expected path).

fkguo/nds-mcp

Instructions file

Claude Code instructions for fkguo/nds-mcp, covering nds-mcp — nuclear data services mcp server, data sources, key conventions, execution workflow (v2) and environment variables.

malkreide/swiss-public-data-mcp

Instructions file

Instructions for malkreide/swiss-public-data-mcp, covering project conventions for claude, how verification works here, check the result, not the activity, run the check that counts, not the one you know and the ruff pin: one source per repository.

fmschulz/omics-skills

Instructions file CodexOpenCode

Instructions for fmschulz/omics-skills, covering agents.md, repository overview, default workflow selection, scientific workflow guardrails and literature-derived discovery guardrails.

donbr/lifesciences-research

Instructions file

Claude Code instructions for donbr/lifesciences-research, covering claude.md, project overview, key documentation, platform skills and speckit workflow (specification-driven development).

zhouziyue233/great-econometrics

Instructions file

Claude Code instructions for zhouziyue233/great-econometrics, covering empirical study agent, role, objective, workflow and phase–tool mapping.

ZHANG-923-ZE/origin-MCP

Instructions file CodexOpenCode

Project instructions for origin-MCP, an MCP server that connects an AI assistant to OriginPro 2025b through Windows automation. OriginPro is software for creating and analyzing scientific graphs.

weinaike/galaxy_morphology_mcp

Instructions file

Claude Code instructions for weinaike/galaxy_morphology_mcp, covering core principles, lyric file parameter format, critical: never write min == max, phase-specific parameter flags and component type quick reference.

malekokour/clinpharm-pmx-skills

Instructions file CodexOpenCode

AGENTS.md instructions for malekokour/clinpharm-pmx-skills, covering clinpharm pmx skills contributor contract, product, the claim this repository defends, where truth lives and public-data boundary.

PancrePal-xiaoyibao/VitaForge

Instructions file

A set of Claude Code instructions for VitaForge, a project focused on pancreatic research and literature review. It documents the main entry point, available commands, dry-experiment engine, and research workflow.

pickleton89/cbioportal-mcp

Instructions file

Instructions for pickleton89/cbioportal-mcp, covering claude.md, project overview, key architecture, core components and architectural patterns.

daviditkin/ltspice-mcp

Instructions file

Claude Code instructions for daviditkin/ltspice-mcp, covering ltspice-mcp — claude code context, project goal, current status (v0.2.0), implemented tools (src/ltspicemcp/server.py) and source files.

viplee110/economics-paper-reviewer

Instructions file

Instructions for viplee110/economics-paper-reviewer: This repository is a portable English-only economics paper pre-review skill.

hooyao/vortex-funnel-gen

Instructions file

Instructions for hooyao/vortex-funnel-gen, covering claude.md, language, project purpose, architecture and tech stack.

spyrosze/mcp-openfoodtox

Instructions file CodexOpenCode

Instructions for spyrosze/mcp-openfoodtox, covering efsa openfoodtox mcp server - project instructions, project overview, dataset structure, core tables (sqlite) and key relationships.

HERRY423/CellTypePilot

Instructions file CodexOpenCode

Instructions for HERRY423/CellTypePilot, covering celltypepilot — codex agent instructions, when to use, prerequisites, workflow — four stages and stage 1: inspect the data.

lucafusarbassini/research-automation

Instructions file

Instructions for lucafusarbassini/research-automation, covering ricet - research automation framework, project overview, claude-flow mcp, workflow habits and file organization.

johnmwangimegwe/kenya-climate-agent

Instructions file CodexOpenCode

An AI agent that answers natural-language questions about climate risk across Kenya's 47 counties by reasoning over Earth Engine data, population exposure, and retrieved Kenyan documents.

dungnotnull/herbal-essential-oil-extraction-agent-skill

Instructions file

Instructions for dungnotnull/herbal-essential-oil-extraction-agent-skill, covering claude.md — skill 289: herbal-essential-oil-extraction, skill identity, problem this skill solves, two complementary implementations and harness flow summary.