Scientific MCP servers

1,371 tagged Scientific, measured the same way as everything else here.

Browse within: mcp-server 350model-context-protocol 299pipeworx 189bioinformatics 59LLM 45agentic-ai 30ai-tools 26fastmcp 24llm-tools 23cyanheads 19arxiv 18climate 15healthcare 15fastapi 14

proteinatlas-server

193

Augmented-Nature/ProteinAtlas-MCP-Server

MCP server Claude CodeCodexCursor +2

MCP server "proteinatlas-server" as configured in Augmented-Nature/ProteinAtlas-MCP-Server. Runs locally from the proteinatlas-server npm package.

not rated 4 10mo ago A tokens not measured

weather

194

haichaozheng/weather-mcp

MCP server Claude CodeCodexCursor +2

PyWeather branch; bindings for Davis Vantage Pro and Pro2 weather stations, upload of weather data (e.g. wunderground.com), and meteorological calculation/conversion functions. Runs locally from the weather Python package.

not rated 4 1y ago A tokens not measured

isaaccorley/planetary-computer-mcp

MCP server Claude CodeCodexCursor +2

A Python MCP Server for interacting with the Planetary Computer STAC Catalog. Runs locally from the planetary-computer-mcp Python package.

not rated 4 6mo ago A tokens not measured original Apache-2.0

mideind/icelandic-morphology-mcp

MCP server Claude CodeCodexCursor +2

MCP server "icelandic-morphology-mcp" as configured in mideind/icelandic-morphology-mcp. Runs locally from the icelandic-morphology-mcp Python package.

not rated 4 10mo ago A tokens not measured original MIT

bach-clinical-trials

197

BACH-AI-Tools/ClinicalTrials-MCP-Server

MCP server Claude CodeCodexCursor +2

MCP server for accessing ClinicalTrials.gov API - search and retrieve clinical trial data. Runs locally from the bach-clinical-trials npm package.

not rated 4 10mo ago A tokens not measured original MIT

the-notebook-mcp

198

svallory/the-notebook-mcp

MCP server Claude CodeCodexCursor +2

Model Context Protocol (MCP) implementation for Jupyter notebooks to overcome limitation with Cursor. Runs locally from the the-notebook-mcp Python package.

not rated 4 1y ago A tokens not measured original MIT

jupyter-kernel-mcp

199

codewithcheese/jupyter-kernel-mcp

MCP server Claude CodeCodexCursor +2

MCP server for stateful Jupyter kernel development with multi-language support (Python, TypeScript, JavaScript). Runs locally from the jupyter-kernel-mcp Python package.

not rated 4 1y ago A tokens not measured

yamcs-mcp-server

200

PaulMRamirez/yamcs-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server "yamcs-mcp-server" as configured in PaulMRamirez/yamcs-mcp-server. Runs locally from the yamcs-mcp-server Python package.

not rated 4 12mo ago A tokens not measured original MIT

mcp-slurm

201

tejasvinu/mcp-slurm

MCP server Claude CodeCodexCursor +2

SLURM MCP server for HPC cluster management. Runs locally from the mcp-slurm npm package.

not rated 4 1y ago A tokens not measured

geoanalisis-mcp

202

alexrobl/geoanalisis-mcp

MCP server Claude CodeCodexCursor +2

MCP server "geoanalisis-mcp" as configured in alexrobl/geoanalisis-mcp. Runs locally from the geoanalisis-mcp Python package.

not rated 4 1mo ago A tokens not measured original MIT

openfda

203

ythalorossy/openfda

MCP server Claude CodeCodexCursor +2

OpenFDA Model Context Protocol. Runs locally from the @ythalorossy/openfda npm package.

not rated 4 changed 1mo ago A tokens not measured original MIT

dicom-mcp

205

PancrePal-xiaoyibao/dicom_download_mcp

MCP server Claude CodeCodexCursor +2

MCP server for DICOM image downloading from multiple medical imaging sources. Runs locally from the dicom-mcp npm package.

not rated 4 9mo ago A tokens not measured

decoupler-mcp

206

scmcphub/decoupler-mcp

MCP server Claude CodeCodexCursor +2

Natural language interface for biological activities analysis with decoupler through MCP. Runs locally from the decoupler-mcp Python package.

not rated 4 1y ago A tokens not measured

hamzameer/ncbi-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server "NCBI Research Assistant" as configured in hamzameer/ncbi-mcp-server. Launched with /Users/S228627/.local/bin/uv run --with mcp[cli] mcp run /Users/S228627/Library/. Needs 1 environment variable to run.

not rated 4 1y ago A tokens not measured

weather

208

PHOENIXxXTM/Claude-MCP-Server

MCP server Claude CodeCodexCursor +2

PyWeather branch; bindings for Davis Vantage Pro and Pro2 weather stations, upload of weather data (e.g. wunderground.com), and meteorological calculation/conversion functions. Runs locally from the weather Python package.

not rated 4 11mo ago A tokens not measured

argus

209

GifariKemal/argus-web-mcp

MCP server Claude CodeCodexCursor +2

Helper routines for using multiple, inexpensive calibrated and synchronized cameras for 3D scientific use. Runs locally from the argus Python package.

not rated 4 5d ago A tokens not measured

beam-analysis-mcp

210

StructuralWizard/beam-analysis-mcp

MCP server Claude CodeCodexCursor +2

MCP server "beam-analysis-mcp" as configured in StructuralWizard/beam-analysis-mcp. Runs locally from the beam-analysis-mcp npm package.

not rated 4 3mo ago A tokens not measured original MIT

dicomweb-mcp-server

211

PantelisGeorgiadis/dicomweb-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server exposing a DICOMweb DICOM archive to AI assistants via QIDO-RS and WADO-RS. Runs locally from the dicomweb-mcp-server npm package. Needs 6 environment variables to run.

not rated 4 6d ago A tokens not measured original MIT

mchs

212

edithatogo/mchs

MCP server Claude CodeCodexCursor +2

Utilities for calculating IHACPA National Weighted Activity Units. Runs locally from the nwau-py Python package.

not rated 4 2d ago A tokens not measured original MIT

paraview-mcp-server

213

failed33/paraview-mcp

MCP server Claude CodeCodexCursor +2

ParaView integration through the Model Context Protocol. Runs locally from the paraview-mcp-server Python package.

not rated 4 yesterday A tokens not measured original MIT

regen-compute

214

regen-network/regen-compute

MCP server Claude CodeCodexCursor +2

Regenerative AI — fund verified ecological regeneration from your AI sessions via Regen Network. Estimate your footprint, browse carbon and biodiversity credits, and retire them on-chain via credit card. Runs locally from the regen-compute npm package.

not rated 4 15d ago A tokens not measured original Apache-2.0

optimade-mcp-server

215

dianfengxiaobo/optimade-mcp-server

MCP server Claude CodeCodexCursor +2

A MCP-compatible OPTIMADE server with configurable filters and endpoints. Runs locally from the optimade-mcp-server Python package.

not rated 4 1y ago A tokens not measured original MIT

string-mcp

216

MCPmed/STRINGmcp

MCP server Claude CodeCodexCursor +2

STRING-DB API MCP Bridge - A comprehensive interface for interacting with the STRING database API. Runs locally from the string-mcp Python package.

not rated 4 1y ago A tokens not measured original BSD-3-Clause