Scientific MCP servers

1,354 tagged Scientific, measured the same way as everything else here.

Browse within: mcp-server 332model-context-protocol 288pipeworx 189bioinformatics 56LLM 44agentic-ai 30ai-tools 24fastmcp 23llm-tools 22cyanheads 21arxiv 18climate 15healthcare 15health 14

molecare-mcp

193

MoleCare/molecare-mcp

MCP server Claude CodeCodexCursor +2

Educational dermatology knowledge and lesion tooling. No credentials needed. Not a medical device. Runs locally from the molecare-mcp npm package. Needs 5 environment variables to run.

not rated 4 +1 today A tokens not measured original Apache-2.0

dicomweb-mcp-server

194

PantelisGeorgiadis/dicomweb-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server exposing a DICOMweb DICOM archive to AI assistants via QIDO-RS and WADO-RS. Runs locally from the dicomweb-mcp-server npm package. Needs 6 environment variables to run.

not rated 4 +1 3mo ago A tokens not measured original MIT

optimade-mcp-server

195

dianfengxiaobo/optimade-mcp-server

MCP server Claude CodeCodexCursor +2

A MCP-compatible OPTIMADE server with configurable filters and endpoints. Runs locally from the optimade-mcp-server Python package.

not rated 4 +1 1y ago A tokens not measured original MIT

comsol-codex-mcp

196

XiaoSe532/comsol-codex-mcp

MCP server Claude CodeCodexCursor +2

MCP server "comsol-codex-mcp" as configured in XiaoSe532/comsol-codex-mcp. Runs locally from the comsol-codex-mcp Python package.

not rated 4 2mo ago A tokens not measured original MIT

mcp-server-cantera

197

StepFunctionLLC/mcp-server-cantera

MCP server Claude CodeCodexCursor +2

MCP server "mcp-server-cantera" as configured in StepFunctionLLC/mcp-server-cantera. Runs locally from the mcp-server-cantera Python package.

not rated 4 today A tokens not measured original MIT

elnora-mcp-server

198

Elnora-AI/elnora-mcp-server

MCP server Claude CodeCodexCursor +2

AI-powered bioprotocol optimization — generate, search, and manage lab protocols via MCP. Runs locally from the @elnora-ai/mcp-server npm package.

not rated 3 3d ago A tokens not measured original Apache-2.0

MeasureSpace/measure-space-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server for weather, climate, air quality, agriculture, pollen and geocoding from measurespace.io. Runs locally from the @measurespace/measure-space-mcp-server npm package. Needs 7 environment variables to run.

not rated 3 6mo ago A tokens not measured original Apache-2.0

gretl-mcp

200

OndrejLapes/GretlMCP

MCP server Claude CodeCodexCursor +2

Run Hansl/Gretl econometrics workflows via MCP with GUI launch and artifacts. Runs locally from the gretl-mcp npm package. Needs 4 environment variables to run.

not rated 3 3mo ago A tokens not measured original MIT

latex-mcp

201

SepineTam/latex-mcp

MCP server Claude CodeCodexCursor +2

Enable AI agents to compile TeX files with LaTeX inside a Docker container. Runs locally from the latex-mcp Python package.

not rated 3 5mo ago A tokens not measured AGPL-3.0

epanet

202

Applied-Artificial-Intelligence-Eurecat/epanet-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server "epanet" as configured in Applied-Artificial-Intelligence-Eurecat/epanet-mcp-server. Runs epanet_mcp.server with python. Needs 1 environment variable to run.

not rated 3 3mo ago A tokens not measured original MIT

open-ephemeris

203

openephemeris/openephemeris-MCP

MCP server Claude CodeCodexCursor +2

Sub-arcsecond ephemeris and astrology on NASA JPL DE440: natal, transits, eclipses, Human Design. Remote server at mcp.openephemeris.com.

not rated 3 2d ago A tokens not measured original MIT

bbox-mcp-server

204

iamvibhorsingh/bbox-mcp-server

MCP server Claude CodeCodexCursor +2

Geospatial toolkit for AI: spatial queries, coord conversion, H3, OSM search, map verification links. Runs locally from the bbox-mcp-server npm package. Needs 3 environment variables to run.

not rated 3 1mo ago A tokens not measured original MIT

mchs

205

edithatogo/mchs

MCP server Claude CodeCodexCursor +2

Utilities for calculating IHACPA National Weighted Activity Units. Runs locally from the nwau-py Python package.

not rated 3 5d ago A tokens not measured original MIT

paraview-mcp-server

206

failed33/paraview-mcp

MCP server Claude CodeCodexCursor +2

ParaView integration through the Model Context Protocol. Runs locally from the paraview-mcp-server Python package.

not rated 3 2d ago A tokens not measured original MIT

plant-genomics

207

musharna/plant-genomics-mcp

MCP server Claude CodeCodexCursor +2

Plant genomics MCP — 50 tools across 23 live backends (Ensembl Plants, Phytozome, UniProt, Europe PMC, QuickGO, Planteome, PlantCyc/PMN, g:Profiler, AlphaFold, PDBe, InterPro, JASPAR, ThaleMine, PANTHER, OrthoDB, AraGWAS, 1001 Genomes, BLAST, Gramene, KEGG, STRING, ATTED-II, BAR) for Claude Code. Runs locally from the…

not rated 3 yesterday A tokens not measured original MIT

rcsb-mcp

208

rcsb/rcsb-mcp

MCP server Claude CodeCodexCursor +2

An MCP server for interrogating PDB structures — search, inspect, and cross-reference across the RCSB Search, Data, and Sequence Coordinates APIs. Runs locally from the rcsb-mcp Python package.

not rated 3 20d ago A tokens not measured original MIT

uniprot-mcp

209

smaniches/uniprot-mcp

MCP server Claude CodeCodexCursor +2

Verifiable, release-aware protein evidence workflows over UniProt and linked scientific sources. Runs locally from the uniprot-mcp-server Python package.

not rated 3 3d ago A tokens not measured original Apache-2.0

xraylib-mcp-server

210

tschoonj/xraylib-mcp-server

MCP server Claude CodeCodexCursor +2

Model Context Protocol server for xraylib X-ray interaction data. Runs locally from the xraylib-mcp-server Python package.

not rated 3 4mo ago A tokens not measured original BSD-3-Clause

heatpump-calculator

211

jiweiqi/heatpump-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server "heatpump-calculator" as configured in jiweiqi/heatpump-mcp-server. Runs locally from the . Python package. Needs 3 environment variables to run.

not rated 3 10mo ago A tokens not measured original MIT archived

IamCatoBot/catobot-autoexperiment-mcp

MCP server Claude CodeCodexCursor +2

MCP server "catobot-autoexperiment-mcp-server" as configured in IamCatoBot/catobot-autoexperiment-mcp. Runs locally from the catobot-autoexperiment-mcp-server Python package.

not rated 3 5mo ago A tokens not measured original Apache-2.0

nougat-mcp

213

svretina/nougat-mcp

MCP server Claude CodeCodexCursor +2

MCP server for high-accuracy scientific PDF OCR using Meta's Nougat. Runs locally from the nougat-mcp Python package.

not rated 3 6mo ago A tokens not measured GPL-3.0

AiAgentKarl/crossref-academic-mcp-server

MCP server Claude CodeCodexCursor +2

MCP Server for scientific papers, citations, and academic research — Crossref, OpenAlex, Semantic Scholar. Runs locally from the crossref-academic-mcp-server Python package.

not rated 3 5mo ago A tokens not measured original MIT

regen-compute

215

regen-network/regen-compute

MCP server Claude CodeCodexCursor +2

Regenerative AI — fund verified ecological regeneration from your AI sessions via Regen Network. Estimate your footprint, browse carbon and biodiversity credits, and retire them on-chain via credit card. Runs locally from the regen-compute npm package.

not rated 3 3d ago A tokens not measured original Apache-2.0

apple-health-mcp

216

smarzola/apple-health-mcp

MCP server Claude CodeCodexCursor +2

MCP server that lets LLMs query your Apple Health export via SQL. Runs locally from the apple-health-mcp Python package.

not rated 3 2mo ago A tokens not measured original MIT