Fully autonomous & self-evolving research from idea to paper. Chat an Idea. Get a Paper. 🦞
Skill Claude CodeCodex
Apply A-Evolve's agentic evolution methodology to improve AI agent performance across runs. Use when the user wants to diagnose agent failures, generate targeted skills from error patterns, evolve system prompts, or accumulate episodic knowledge. Works standalone or inside AutoResearchClaw pipelines. Triggers on…
Skill Claude CodeCodex
Bioinformatics with Biopython for sequence manipulation, file parsing, BLAST, and phylogenetics. Use when working with DNA/RNA/protein sequences or biological databases.
Skill Claude CodeCodex
Computational chemistry with RDKit for molecular analysis, descriptors, fingerprints, and substructure search. Use when working with SMILES, drug discovery, or cheminformatics tasks.
Skill Claude CodeCodex
Structured scientific hypothesis generation from observations. Use when formulating testable hypotheses, competing explanations, or experimental predictions.
Skill Claude CodeCodex
Systematic literature review methodology including search strategy, screening, and synthesis. Use when conducting literature reviews or writing background sections.
Skill Claude CodeCodex
Run the ResearchClaw autonomous research pipeline from a topic, config, and output directory.
Skill Claude CodeCodex
Publication-ready scientific figure design with matplotlib and seaborn. Use when creating journal submission figures with proper formatting, accessibility, and statistical annotations.
Skill Claude CodeCodex
Academic manuscript writing with IMRAD structure, citation formatting, and reporting guidelines. Use when drafting or revising research papers.
Skill Claude CodeCodex
Statistical test selection, assumption checking, and APA-formatted reporting. Use when analyzing experimental results or writing results sections.
Skill Claude CodeCodex
Run Flux Balance Analysis (FBA) and related constraint-based simulations using COBRApy. Covers standard FBA, parsimonious FBA (pFBA), Flux Variability Analysis (FVA), loopless FBA, gene/reaction knockouts, and carbon source swapping. Outputs flux distributions and CSV files.
Skill Claude CodeCodex
Analyse FBA flux distributions to extract biological insights. Covers gene essentiality, phenotypic phase planes, flux sampling, pathway-level aggregation, secretion product prediction, and production of publication- quality figures.
Skill Claude CodeCodex
Build or load a genome-scale metabolic model (GSMM) using COBRApy. Covers loading from BIGG, constructing minimal models from scratch, setting medium constraints, and exporting validated .json model files.
Skill Claude CodeCodex
Validate a COBRApy genome-scale metabolic model for mass/charge balance, stoichiometric consistency, biomass producibility, dead-end metabolites, thermodynamic loops, and GPR rule formatting. Outputs a structured validation report with errors and warnings.
Skill Claude CodeCodex
Plan publishable constraint-based metabolic modelling studies when the user has a broad biological or metabolic-engineering topic but no concrete dataset, organism, model, or hypothesis. Selects feasible BiGG/COBRA models, objectives, perturbations, analyses, metrics, figures, and risk controls before FBA code is…
Skill Claude CodeCodex
Orchestrate the full metabolic flux analysis pipeline from model loading to phenotype prediction and publication figures. Triggers when the user provides an organism name, BIGG model ID, or custom reaction list and wants end-to-end metabolic modelling run automatically.
Skill Claude CodeCodex
Orchestrate a statistical research pipeline centered on formal problem formulation, method proposal, theoretical analysis, experimental evaluation, comparison, and final result synthesis.
Skill Claude CodeCodex
Validate statistical research outputs for formulation quality, method-to- problem alignment, theory presence, experimental evidence, fair comparison, artifact completeness, and final-claim consistency.
Skill Claude CodeCodex
Design and run statistical experiments that test the formal problem, proposed methods, theoretical predictions, baselines, and ablations.
Skill Claude CodeCodex
Design statistical methods, baselines, diagnostics, variants, and ablations that directly address a formal problem formulation.
Skill Claude CodeCodex
Formulate statistical research problems with formal notation, target parameters, assumptions, hypotheses, evaluation criteria, and theory targets.
Skill Claude CodeCodex
Analyze theoretical properties of statistical methods under the formal formulation: identifiability, bias, variance, consistency, asymptotics, coverage, error bounds, robustness, and limitations.
Skill Claude CodeCodex
Best practices for image classification tasks. Use when working on CIFAR, ImageNet, or other classification benchmarks.
Skill Claude CodeCodex
Best practices for object detection tasks. Use when working on COCO, VOC, or detection architectures like YOLO and DETR.
Skill Claude CodeCodex
Best practices for LLM alignment techniques including RLHF, DPO, and instruction tuning. Use when working on alignment or safety.