alterlab-adaptyv

alterlab-adaptyv is a skill for Claude Code from AlterLab-IEU/AlterLab-Academic-Skills. It costs 162 tokens per session (1,649 once invoked), scanned A, original, MIT.

A tool for sending protein sequences to Adaptyv Bio's cloud laboratory and retrieving experimental results. It can also score or improve sequences with computational protein-design tools before submission.

In plain words
What is it for?
Use it to prepare protein sequences, submit experiments through Adaptyv's API, and retrieve laboratory data. Wet-lab experiments can take weeks, depending on the experiment quote.
Why use it?
It connects computer-based protein design with wet-lab testing, so designed sequences can be checked for properties such as binding, stability, expression, or fluorescence.

Skill for Claude Code

Written for Claude Code: allowed-tools in frontmatter. Also seen: mentions Claude Code.

Part of the alterlab-domain-specific plugin — 18 skills shipped together

Good fit Use it to prepare protein sequences, submit experiments through Adaptyv's API, and retrieve laboratory data. Wet-lab experiments can take weeks, depending on the experiment quote.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/alterlab-ieu/alterlab-academic-skills/alterlab-adaptyv
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-adaptyv
Clone the repo
git clone --depth 1 https://github.com/AlterLab-IEU/AlterLab-Academic-Skills

Made for: Claude Code.

Or install alterlab-domain-specific, the plugin that ships this one along with the rest of its 18 skills.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for alterlab-adaptyv

README.md
[![agentmods](https://agentmods.dev/badge/skills/alterlab-ieu/alterlab-academic-skills/alterlab-adaptyv/github.svg)](https://agentmods.dev/skills/alterlab-ieu/alterlab-academic-skills/alterlab-adaptyv)
Your own site
<a href="https://agentmods.dev/skills/alterlab-ieu/alterlab-academic-skills/alterlab-adaptyv"><img src="https://agentmods.dev/badge/skills/alterlab-ieu/alterlab-academic-skills/alterlab-adaptyv/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for alterlab-adaptyv

Your own site · 80×15
<a href="https://agentmods.dev/skills/alterlab-ieu/alterlab-academic-skills/alterlab-adaptyv"><img src="https://agentmods.dev/badge/skills/alterlab-ieu/alterlab-academic-skills/alterlab-adaptyv.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 162 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,649 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 1 finding. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector warn 7 Sept 2026
SkillSpector: 1 finding, up to medium

These are SkillSpector’s own severities. On a checked sample its high-severity flags on skills were ~96% false positives — a documented command, a public API, a “never do X” rule — so we show them as a caution to read, not a verdict. Why →

  • medium Data Exfiltration · line 70
    Data is being sent to an external URL. This could be legitimate telemetry or data exfiltration. Manual review is recommended.
    Fix: Verify the destination URL is trusted and necessary. Remove or replace with documented APIs. Ensure no secrets, tokens, or PII are transmitted.
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00162 $0.01649
Opus 5 $0.00081 $0.00825
Sonnet 5 $0.00032 $0.00330
Haiku 4.5 $0.00016 $0.00165

Measured 6d ago against content hash 40781b3c99ad, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-11, from the pricing page.

Security

Grade A, and why

alterlab-adaptyv scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 6d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Makes network callslowCapability

Not a fault in itself. Listed so you know the mod talks to something, and to what.

resp = requests.post(
skills/domain-specific/alterlab-adaptyv/SKILL.md · 134 lines

How it starts

The opening of the file, as written. The whole thing — 134 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Adaptyv

Adaptyv Bio runs the Foundry cloud lab: submit protein sequences and a target, the lab runs the assay, and you retrieve experimental data (binding/affinity, thermostability, expression, fluorescence). The public Foundry API drives the full lifecycle programmatically. Turnaround is on the order of weeks; confirm the current estimate from the per-experiment quote rather than assuming a fixed number.

The exact request/response shapes evolve. This skill captures the verified API contract and conventions; for the authoritative spec see the OpenAPI doc at https://foundry-api-public.adaptyvbio.com/api/v1/openapi.json and https://docs.adaptyvbio.com.

Prefer the official tooling first

Adaptyv ships its own integrations - reach for them before hand-rolling requests:

  • Official Python SDKgithub.com/adaptyvbio/adaptyv-sdk (MIT). Decorator-based: wrap a design function with @lab.experiment(target=...); reads ADAPTYV_API_KEY / ADAPTYV_API_URL (and optional ADAPTYV_ORGANIZATION_ID) from the environment. Install from source (pip install -e . after cloning — no PyPI release confirmed; verify before pinning).
  • Adaptyv's own Claude Code skillsgithub.com/adaptyvbio/protein-design-skills. Useful prior art for protein-design + Foundry workflows.

Use this skill's raw-requests recipes when the SDK is unavailable or you need fine control over the lifecycle.

Quick Start

Authentication Setup

  1. Create a token in the Foundry portal: https://foundry.adaptyvbio.com/Organization → Settings → Tokens (pick a role: Member = read/write, Viewer = read-only; set an expiry). The token value is shown only once — copy it immediately.
  2. Set it in your environment (never commit it):
export ADAPTYV_API_KEY="your_token_here"

Or put it in a gitignored .env:

ADAPTYV_API_KEY=your_token_here

Installation

If using the raw API directly:

uv pip install requests python-dotenv

Basic Usage

Read the full file on GitHub · 134 lines

Files

What ships with it

5 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 6d ago First seen · 134 lines · 162 tokens per session scan A 40781b3c99ad

Subscribe to this mod's changes

alterlab-adaptyv is a skill published in the GitHub repository AlterLab-IEU/AlterLab-Academic-Skills (66 stars, last pushed 6d ago), licensed MIT. It adds 162 tokens to every session and 1,649 once invoked, about $0.0008 per session on Opus 5. A static security scan graded it A with 1 finding (makes network calls). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-05.

Related

Other skills, from other repositories

ob-hrm-scale-adaptor

A guide for adapting organisational behaviour and human-resources survey scales across languages and cultures. It covers permission checks, translation and back-translation, expert review, participant interviews, and tests of whether groups interpret the scale comparably.

Nero1688/claude-academic-skills · 318 tokens

r-spss-syntax-architect

A guide for turning research hypotheses into repeatable R or SPSS code for statistical analysis. It covers panel data, where the same companies or other units are observed over time, as well as interaction effects, curves, and mediation.

Nero1688/claude-academic-skills · 406 tokens

thesis-consistency-audit

A consistency audit for quantitative master’s and doctoral theses in management, finance, or strategy. It checks whether numbers, tables, analyses, and claims agree, and can inspect hidden author information in office documents.

Nero1688/claude-academic-skills · 500 tokens

management-figure

A chart-making toolkit for evidence-based management, finance, and strategy research. It creates publication-ready plots from regression results and tracking data, including coefficient, interaction, group-comparison, trend, and curved-relationship charts.

Nero1688/claude-academic-skills · 374 tokens

reproducibility-architect

A guide for packaging research so another person can rerun its data processing and analysis. A replication package is the project files, instructions, code, data guidance, and software details needed to reproduce published results.

Nero1688/claude-academic-skills · 606 tokens

journal-submission-scout

A research tool for choosing a journal for a completed paper. It searches for journals that publish similar work, compares public information such as citation data, fees, open-access listing, and review practices, and screens for warning signs of predatory journals, which charge authors without providing trustworthy publishing services.

Nero1688/claude-academic-skills · 479 tokens