Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-clinpgxgit clone --depth 1 https://github.com/AlterLab-IEU/AlterLab-Academic-SkillsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/alterlab-ieu/alterlab-academic-skills/alterlab-clinpgx)<a href="https://agentmods.dev/skills/alterlab-ieu/alterlab-academic-skills/alterlab-clinpgx"><img src="https://agentmods.dev/badge/skills/alterlab-ieu/alterlab-academic-skills/alterlab-clinpgx/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/alterlab-ieu/alterlab-academic-skills/alterlab-clinpgx"><img src="https://agentmods.dev/badge/skills/alterlab-ieu/alterlab-academic-skills/alterlab-clinpgx.svg" alt="Reviewed on agentmods" width="80" height="20"></a>- NVIDIA SkillSpector warn
SkillSpector: 2 findings, up to medium
These are SkillSpector’s own severities. On a checked sample its high-severity flags on skills were ~96% false positives — a documented command, a public API, a “never do X” rule — so we show them as a caution to read, not a verdict. Why →
- medium Data Exfiltration · line 46 Data is being sent to an external URL. This could be legitimate telemetry or data exfiltration. Manual review is recommended.Fix: Verify the destination URL is trusted and necessary. Remove or replace with documented APIs. Ensure no secrets, tokens, or PII are transmitted.
- medium Data Exfiltration · line 146 Data is being sent to an external URL. This could be legitimate telemetry or data exfiltration. Manual review is recommended.Fix: Verify the destination URL is trusted and necessary. Remove or replace with documented APIs. Ensure no secrets, tokens, or PII are transmitted.
What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00154 | $0.01957 |
| Opus 5 | $0.00077 | $0.00979 |
| Sonnet 5 | $0.00031 | $0.00391 |
| Haiku 4.5 | $0.00015 | $0.00196 |
Grade A, and why
alterlab-clinpgx scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 8d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Makes network callslowCapability
Not a fault in itself. Listed so you know the mod talks to something, and to what.
allowed-tools: Read WebFetch Bash(curl:*) Bash(python:*) How it starts
The opening of the file, as written. The whole thing — 152 lines — stays where its author put it; the contents beside it link to each section on GitHub.
ClinPGx Database
Overview
ClinPGx (Clinical Pharmacogenomics Database) is a comprehensive resource for clinical pharmacogenomics, the successor to PharmGKB. It consolidates data from PharmGKB, CPIC, and PharmCAT, providing curated information on how genetic variation affects medication response. Access gene-drug pairs, clinical guidelines, allele functions, and drug labels for precision medicine.
When to Use This Skill
Use this skill for:
- Gene-drug interactions — how variants affect drug metabolism, efficacy, or toxicity
- CPIC guidelines — evidence-based clinical practice guidelines for pharmacogenetics
- Allele information — allele function, frequency, and phenotype data
- Drug labels — FDA and other regulatory pharmacogenomic labeling
- Pharmacogenomic annotations — curated literature on gene-drug-disease relationships
- Clinical decision support — PharmDOG for phenoconversion and custom genotype interpretation
- Precision medicine / personalized dosing — genotype-guided dosing recommendations
- Drug metabolism — CYP450 and other pharmacogene functions
- Adverse drug reactions — genetic risk factors for drug toxicity
Setup and Access Essentials
Only requests is needed. Run the helper script (or any snippet) with an
ephemeral dependency — no venv to manage:
uv run --with requests python scripts/query_clinpgx.py
# or, inside an existing project venv: uv pip install requests
Base URL: https://api.clinpgx.org/v1/data/
- Resource addressing: ClinPGx resources are addressed by ClinPGx accession
IDs in the path (e.g. gene CYP2D6 =
PA128, CYP2C9 =PA126), not by gene symbols or rsIDs. To resolve a symbol or rsID, query the collection endpoint with parameters (e.g.GET /v1/data/gene?symbol=CYP2D6,GET /v1/data/variant?symbol=rs4244285) and read the accession ID from the response. - Response envelope (verified): every response is a JSON object
{"status": "success"|"fail", "data": [...]}— the payload is never a bare list. Read results fromresponse.json()["data"]; onstatus == "fail",datais{"errors": [...]}(e.g. "No results matching criteria"). - Query-param convention (verified): genes filter on
relatedGenes.symbol(the.nameform fails), while chemicals/drugs filter onrelatedChemicals.name—relatedChemicals.symbolsilently returnsstatus: "fail"with zero results. Thegenecollection takes?symbol=, thechemicalcollection takes?name=, andvariantaccepts?symbol=/?name=. - Rate limits: 2 requests per second maximum; excessive requests return HTTP 429. Implement a ~500ms delay between requests.
- Authentication: Not required for basic access.
- Data license: Creative Commons Attribution-ShareAlike 4.0 International.
- For substantial API use, notify the ClinPGx team at [email protected].
What ships with it
6 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 8d ago First seen · 152 lines · 154 tokens per session scan A 731253015424
alterlab-clinpgx is a skill published in the GitHub repository AlterLab-IEU/AlterLab-Academic-Skills (66 stars, last pushed 6d ago), licensed MIT. It adds 154 tokens to every session and 1,957 once invoked, about $0.0008 per session on Opus 5. A static security scan graded it A with 1 finding (makes network calls). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.
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