disease-research

disease-research is a skill for Claude Code, Codex from ammawla/encode-toolkit. It costs 133 tokens per session (6,066 once invoked), scanned A, original, AGPL-3.0.

A research workflow using ENCODE functional genomics data, which records how genes are regulated and how DNA regions function. It connects disease-associated genetic variants with regulatory evidence.

In plain words
What is it for?
Use it to study disease-related variants, annotate genomic regions, identify therapeutic targets, build regulatory models, or compare findings with clinical trials.
Why use it?
It helps move from genetic associations to possible disease mechanisms, regulatory regions, and treatment targets.

Skill for Claude CodeCodex

Part of the encode-toolkit plugin — 47 skills shipped together

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/ammawla/encode-toolkit/disease-research
Any agent
npx skills add ammawla/encode-toolkit --skill disease-research
Clone the repo
git clone --depth 1 https://github.com/ammawla/encode-toolkit

Made for: Claude Code, Codex.

Or install encode-toolkit, the plugin that ships this one along with the rest of its 47 skills.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for disease-research

README.md
[![agentmods](https://agentmods.dev/badge/skills/ammawla/encode-toolkit/disease-research.svg)](https://agentmods.dev/skills/ammawla/encode-toolkit/disease-research)
Your own site
<a href="https://agentmods.dev/skills/ammawla/encode-toolkit/disease-research"><img src="https://agentmods.dev/badge/skills/ammawla/encode-toolkit/disease-research.svg" alt="Measured on agentmods" height="20"></a>
Per session 133 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 6,066 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00133 $0.06066
Opus 5 $0.00067 $0.03033
Sonnet 5 $0.00027 $0.01213
Haiku 4.5 $0.00013 $0.00607

Measured 5d ago against content hash a436fcea00b4, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

disease-research scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

plugin/skills/disease-research/SKILL.md · 457 lines

The source is not reproduced here

Licensed AGPL-3.0

The repository is licensed AGPL-3.0, which this catalogue does not treat as permission to reproduce the file. Read it at the source.

Read it on GitHub

Files

What ships with it

1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 5d ago First seen · 457 lines · 133 tokens per session scan A a436fcea00b4

Subscribe to this mod's changes

disease-research is a skill published in the GitHub repository ammawla/encode-toolkit (24 stars, last pushed 1mo ago), licensed AGPL-3.0. It adds 133 tokens to every session and 6,066 once invoked, about $0.0007 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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