setup

setup is a skill for Claude Code from ammawla/encode-toolkit. It costs 28 tokens per session (3,078 once invoked), scanned C, original, AGPL-3.0.

A setup guide for connecting to the ENCODE Toolkit server, which provides access to ENCODE genomics data and tools.

In plain words
What is it for?
It is for installing, configuring, and troubleshooting the ENCODE server connection.
Why use it?
It helps resolve installation, configuration, and connection problems before using the ENCODE connector.

Skill for Claude Code

Written for Claude Code: disable-model-invocation in frontmatter.

Part of the encode-toolkit plugin — 47 skills, 1 MCP server shipped together

Good fit It is for installing, configuring, and troubleshooting the ENCODE server connection.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/ammawla/encode-toolkit/setup
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add ammawla/encode-toolkit --skill setup
Clone the repo
git clone --depth 1 https://github.com/ammawla/encode-toolkit

Made for: Claude Code.

Or install encode-toolkit, the plugin that ships this one along with the rest of its 47 skills, 1 MCP server.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for setup

README.md
[![agentmods](https://agentmods.dev/badge/skills/ammawla/encode-toolkit/setup/github.svg)](https://agentmods.dev/skills/ammawla/encode-toolkit/setup)
Your own site
<a href="https://agentmods.dev/skills/ammawla/encode-toolkit/setup"><img src="https://agentmods.dev/badge/skills/ammawla/encode-toolkit/setup/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for setup

Your own site · 80×15
<a href="https://agentmods.dev/skills/ammawla/encode-toolkit/setup"><img src="https://agentmods.dev/badge/skills/ammawla/encode-toolkit/setup.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 28 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 3,078 The whole file, excluding the scripts and references it only reads on demand.
Security scan C 2 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00028 $0.03078
Opus 5.5 $0.00011 $0.01231
Sonnet 5.5 $0.00006 $0.00616
Haiku 4.5 $0.00003 $0.00308

Measured 1mo ago against content hash 1101898eace2, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade C, and why

setup scanned grade C with 2 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Downloads and executes remote codehighSupply chain

curl | sh runs whatever the server returns today, which is not necessarily what it returned when this was reviewed.

| "uvx not found" | uv not installed | `curl -LsSf https://astral.sh/uv/install.sh \| sh` |

Makes network callslowCapability

Not a fault in itself. Listed so you know the mod talks to something, and to what.

| "uvx not found" | uv not installed | `curl -LsSf https://astral.sh/uv/install.sh \| sh` |
plugin/skills/setup/SKILL.md · 325 lines

The source is not reproduced here

Licensed AGPL-3.0

The repository is licensed AGPL-3.0, which this catalogue does not treat as permission to reproduce the file. Read it at the source.

Read it on GitHub

Files

What ships with it

1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago Changed · +11 lines 1101898eace2
  2. 1mo ago First seen · 314 lines · 28 tokens per session scan C 03e36f2d290d

Subscribe to this mod's changes

setup is a skill published in the GitHub repository ammawla/encode-toolkit (21 stars, last pushed 26d ago), licensed AGPL-3.0. It adds 28 tokens to every session and 3,078 once invoked, about $0.0001 per session on Opus 5.5. A static security scan graded it C with 2 findings (downloads and executes remote code, makes network calls). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.

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