binder-lane-round

binder-lane-round is a skill for Claude Code from BioSymphony/structure-factory. It costs 32 tokens per session (1,693 once invoked), scanned A, original, MIT.

A framework for planning and running controlled rounds of protein-binder design, where candidate proteins are made to attach to a chosen target. It compares different toolchains, execution setups, licences, and result checks.

In plain words
What is it for?
Use it to compare binder-design workflows against a public or synthetic target, define stage-by-stage tools, and run authorised local adapters.
Why use it?
It gives each comparison a fixed study plan and records what tools, targets, controls, and limits were used. This makes results easier to interpret without claiming more than the run supports.

Skill for Claude Code

Written for Claude Code: shipped in a Claude Code plugin.

Part of the biosymphony-structure-factory plugin — 2 skills shipped together , and of biosymphony-structure-factory

Good fit Use it to compare binder-design workflows against a public or synthetic target, define stage-by-stage tools, and run authorised local adapters.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/biosymphony/structure-factory/binder-lane-round
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add BioSymphony/structure-factory --skill binder-lane-round
Clone the repo
git clone --depth 1 https://github.com/BioSymphony/structure-factory

Made for: Claude Code.

Or install biosymphony-structure-factory, the plugin that ships this one along with the rest of its 2 skills.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for binder-lane-round

README.md
[![agentmods](https://agentmods.dev/badge/skills/biosymphony/structure-factory/binder-lane-round/github.svg)](https://agentmods.dev/skills/biosymphony/structure-factory/binder-lane-round)
Your own site
<a href="https://agentmods.dev/skills/biosymphony/structure-factory/binder-lane-round"><img src="https://agentmods.dev/badge/skills/biosymphony/structure-factory/binder-lane-round/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for binder-lane-round

Your own site · 80×15
<a href="https://agentmods.dev/skills/biosymphony/structure-factory/binder-lane-round"><img src="https://agentmods.dev/badge/skills/biosymphony/structure-factory/binder-lane-round.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 32 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,693 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00032 $0.01693
Opus 5 $0.00016 $0.00847
Sonnet 5 $0.00006 $0.00339
Haiku 4.5 $0.00003 $0.00169

Measured 5d ago against content hash 73bd5478438a, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-09, from the pricing page.

Security

Grade A, and why

binder-lane-round scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/binder-lane-round/SKILL.md · 115 lines

How it starts

The opening of the file, as written. The whole thing — 115 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Binder Lane Round

Use one round contract to compare one or more binder-design toolchains against a fixed public target and site.

Read First

  • references/docs/binder-lane-round.md
  • references/docs/binder-study-decision-loop.md
  • references/docs/binder-controls.md
  • references/NON_CLAIMS.md
  • references/docs/tooling-and-licensing.md
  • references/docs/compute-backends.md

Scope

The lane validates requests, materializes plans and handoffs, runs synthetic contract checks, and runs validated fixed-argument local adapters after explicit authorization. A runtime registry below .runtime/ can describe another local tool, API client, cloud client, scheduler, or container entry point.

Required Decisions

Declare:

  • the public or synthetic target accession, chain, and required residue selections
  • whether reference_scope preserves the Anthropic workflow shape or checks the published tool identities on the bounded stages
  • whether each arm replays those identities, replaces tools, or joins a replay-and-replacement comparison
  • the generator, sequence designer, predictors, scorers, and filters
  • the execution mix for each stage
  • code, weight, dependency, API-term, redistribution, and use-context constraints
  • the budget ceiling and runtime cap
  • the planned round count
  • one primary metric and a checkable stopping rule
  • the required and optional controls for any measured calibration
  • the expected artifacts, exact counts, hashes, validation notes, and cleanup requirements

Workflow

  1. Record the target, site, study mode, tool mix, execution mix, use constraints, budget, rounds, metric, and stopping rule.
  2. Run bsf binder-lane menu, then validate the request with plan-request.
  3. Materialize plan.json, round-contract.json, and execution-handoff.json with plan.
  4. Run preflight, then run target-check on the coordinate input before generation.
  5. Use run only for a public_synthetic_demo plan.
  6. Run adapters to inspect bundled records. If a selected tool has no bundled command, create a validated adapter registry below .runtime/.
  7. Run prepare-execution with the exact target report and stage settings. Resolve its per-selector readiness gaps before local controller execution.
  8. Dry-run each local adapter or the prepared controller request.
  9. For a remote route, validate the request with remote-request. Use remote-receipt after the user-supplied dispatcher exports artifacts and verifies cleanup.
  10. Before a real start, obtain approval for the named route, data posture, budget, runtime, and any paid launch, non-public upload, terms acceptance, or large or license-gated download.
  11. Start an approved local adapter or controller with --authorize-local-execution. Add --authorize-network or --authorize-license-gates only when the selected adapter requires them.
  12. Run closeout to count, parse, and hash the exact declared outputs before stage completion.
  13. For a measured primary metric, run calibrate-controls and inspect its readiness record.
  14. Run round-decision against the sequential round history. Pass the ready calibration with --calibration when the metric requires it.
  15. Start another round only when the decision is continue and the remaining budget covers that round.

Read the full file on GitHub · 115 lines

Files

What ships with it

38 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 5d ago First seen · 115 lines · 32 tokens per session scan A 73bd5478438a

Subscribe to this mod's changes

binder-lane-round is a skill published in the GitHub repository BioSymphony/structure-factory (5 stars, last pushed 7d ago), licensed MIT. It adds 32 tokens to every session and 1,693 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-04.

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