boltzgen

boltzgen is a skill for Claude Code, Codex from BioTender-max/ProteinClaw. It costs 92 tokens per session (1,194 once invoked), scanned A, original, no licence file.

An all-atom protein design tool based on the BoltzGen diffusion model. All-atom design considers side chains and other atoms, not only the protein backbone.

In plain words
What is it for?
Creating side-chain-aware designs, designing around ligands, specifying binding geometries, and configuring runs with YAML files.
Why use it?
It helps design proteins around small molecules or ligands and target specific binding shapes from the beginning.

Skill for Claude CodeCodex

Which agent this was written for is unclear — body not stored (licence); the path alone says nothing.

Good fit Creating side-chain-aware designs, designing around ligands, specifying binding geometries, and configuring runs with YAML files.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/biotender-max/proteinclaw/boltzgen
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add BioTender-max/ProteinClaw --skill boltzgen
Clone the repo
git clone --depth 1 https://github.com/BioTender-max/ProteinClaw

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for boltzgen

README.md
[![agentmods](https://agentmods.dev/badge/skills/biotender-max/proteinclaw/boltzgen/github.svg)](https://agentmods.dev/skills/biotender-max/proteinclaw/boltzgen)
Your own site
<a href="https://agentmods.dev/skills/biotender-max/proteinclaw/boltzgen"><img src="https://agentmods.dev/badge/skills/biotender-max/proteinclaw/boltzgen/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for boltzgen

Your own site · 80×15
<a href="https://agentmods.dev/skills/biotender-max/proteinclaw/boltzgen"><img src="https://agentmods.dev/badge/skills/biotender-max/proteinclaw/boltzgen.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 92 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,194 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00092 $0.01194
Opus 5 $0.00046 $0.00597
Sonnet 5 $0.00018 $0.00239
Haiku 4.5 $0.00009 $0.00119

Measured 9d ago against content hash 1486feb4395b, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-09, from the pricing page.

Security

Grade A, and why

boltzgen scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/boltzgen/SKILL.md · 167 lines

The source is not reproduced here

No licence file

A repository with no LICENSE is all rights reserved by default, so the body is not copied here. The metadata, the measurements and the link are.

Read it on GitHub

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 9d ago First seen · 167 lines · 92 tokens per session scan A 1486feb4395b

Subscribe to this mod's changes

boltzgen is a skill published in the GitHub repository BioTender-max/ProteinClaw (11 stars, last pushed 6mo ago), with no licence file. It adds 92 tokens to every session and 1,194 once invoked, about $0.0005 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Related

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All-atom protein design using BoltzGen diffusion model. Use this skill when: (1) Need side-chain aware design from the start, (2) Designing around small molecules or ligands, (3) Want all-atom diffusion (not just backbone), (4) Require precise binding geometries, (5) Using YAML-based configuration. For structure…

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All-atom protein design using BoltzGen diffusion model. Use this skill when: (1) Need side-chain aware design from the start, (2) Designing around small molecules or ligands, (3) Want all-atom diffusion (not just backbone), (4) Require precise binding geometries, (5) Using YAML-based configuration. For backbone-only…

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All-atom protein design using BoltzGen diffusion model. Use this skill when: (1) Need side-chain aware design from the start, (2) Designing around small molecules or ligands, (3) Want all-atom diffusion (not just backbone), (4) Require precise binding geometries, (5) Using YAML-based configuration. For backbone-only…

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boltzgen

All-atom protein design using BoltzGen diffusion model. Use this skill when: (1) Need side-chain aware design from the start, (2) Designing around small molecules or ligands, (3) Want all-atom diffusion (not just backbone), (4) Require precise binding geometries, (5) Using YAML-based configuration. For backbone-only…

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