Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add HolobiomicsLab/asb-skill-collections --skill tabix-index-validation-and-inspectiongit clone --depth 1 https://github.com/HolobiomicsLab/asb-skill-collectionsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/holobiomicslab/asb-skill-collections/tabix-index-validation-and-inspection)<a href="https://agentmods.dev/skills/holobiomicslab/asb-skill-collections/tabix-index-validation-and-inspection"><img src="https://agentmods.dev/badge/skills/holobiomicslab/asb-skill-collections/tabix-index-validation-and-inspection/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/holobiomicslab/asb-skill-collections/tabix-index-validation-and-inspection"><img src="https://agentmods.dev/badge/skills/holobiomicslab/asb-skill-collections/tabix-index-validation-and-inspection.svg" alt="Reviewed on agentmods" width="80" height="20"></a>- NVIDIA SkillSpector pass
What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00065 | $0.01488 |
| Opus 5 | $0.00032 | $0.00744 |
| Sonnet 5 | $0.00013 | $0.00298 |
| Haiku 4.5 | $0.00006 | $0.00149 |
Grade A, and why
tabix-index-validation-and-inspection scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 6d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 98 lines — stays where its author put it; the contents beside it link to each section on GitHub.
tabix-index-validation-and-inspection
Summary
Validate and inspect tabix-indexed bgzipped methylation data files to confirm correct indexing, file integrity, and methylKit metadata presence. This skill ensures that disk-backed methylRawListDB objects reference valid external tabix files with proper headers before downstream analysis.
When to use
After creating a methylRawListDB object via methRead() with dbtype='tabix', or when loading pre-existing tabix-backed methylation files, to verify that bgzipped files are correctly indexed and contain required methylKit metadata headers (≥v1.13.1) before proceeding with differential methylation analysis or sample merging.
When NOT to use
- Input data is already loaded in memory as a standard methylRawList (non-database-backed) object
- Tabix files are not available or have been deleted after initial loading
- methylKit version is < 1.13.1 and does not support tabix-backed database mode
Inputs
- methylRawListDB object created with dbtype='tabix'
- bgzipped tabix-indexed methylation files (.gz with .tbi index)
- methylKit metadata headers within tabix files
Outputs
- Validated methylRawListDB object with confirmed dbpath references
- Inspection report of tabix file headers and metadata
- File integrity assessment (presence of index, header validity, version check)
How to apply
Verify that the methylRawListDB object's dbpath slot in each constituent methylRaw object references valid file paths to bgzipped tabix files. Inspect the tabix file headers using appropriate tools (e.g., zcat or tabix command-line utilities) to confirm presence of methylKit-specific metadata and version information. Cross-check that file timestamps and index (.tbi) presence match expected standards for database-mode storage. Validate object structure by examining the methylRawListDB list composition and ensuring coverage statistics align with input file contents. Compare object integrity metrics (total bases, sample counts) against the raw tabix file statistics to confirm lossless loading from external storage.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 6d ago First seen · 98 lines · 65 tokens per session scan A 9d5dfbf9368e
tabix-index-validation-and-inspection is a skill published in the GitHub repository HolobiomicsLab/asb-skill-collections (15 stars, last pushed 2d ago), licensed Apache-2.0. It adds 65 tokens to every session and 1,488 once invoked, about $0.0003 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-06.
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