Scientific Agent Skills is a collection of reusable procedures that give AI agents capabilities for scientific research across areas such as biology, chemistry, medicine, and drug discovery. It is used by researchers and by people building AI scientist workflows with compatible coding agents. The catalogue contains many of the project's skills and supporting instructions.
Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add K-Dense-AI/scientific-agent-skills --skill cirqgit clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skillsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/k-dense-ai/scientific-agent-skills/cirq)<a href="https://agentmods.dev/skills/k-dense-ai/scientific-agent-skills/cirq"><img src="https://agentmods.dev/badge/skills/k-dense-ai/scientific-agent-skills/cirq/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/k-dense-ai/scientific-agent-skills/cirq"><img src="https://agentmods.dev/badge/skills/k-dense-ai/scientific-agent-skills/cirq.svg" alt="Reviewed on agentmods" width="80" height="20"></a>- Socket pass
- Snyk warn
- NVIDIA SkillSpector pass
What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00067 | $0.03218 |
| Opus 5.5 | $0.00027 | $0.01287 |
| Sonnet 5.5 | $0.00013 | $0.00644 |
| Haiku 4.5 | $0.00007 | $0.00322 |
Grade A, and why
cirq scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 14d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
Copies of this mod
How it starts
The opening of the file, as written. The whole thing — 379 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Cirq - Quantum Computing with Python
Cirq is Google Quantum AI's open-source framework for designing, simulating, and running quantum circuits on quantum computers and simulators.
When to Use This Skill
Use this skill when:
- Building, simulating, or optimizing NISQ circuits in Python
- Running jobs on Google Quantum AI processors (via
cirq-google) or partner backends (IonQ, Azure Quantum, AQT, Pasqal) - Modeling noise, compiling to hardware gatesets, or designing characterization experiments
- Using parameter sweeps, transformers, or the ReCirq experiment patterns
For IBM hardware use qiskit; for quantum ML with autodiff use pennylane; for physics simulations use qutip.
Installation
Examples target Cirq 1.7.0 on Python 3.11+. Keep Cirq vendor packages on the matching release; independently versioned integrations such as Azure Quantum need their own compatibility check.
uv pip install "cirq-core==1.7.0"
# Optional OpenQASM import dependency
uv pip install ply
For hardware integration (pin matching versions for reproducibility):
# Google Quantum Engine (requires approved GCP project access)
uv pip install "cirq-google==1.7.0"
# IonQ
uv pip install "cirq-ionq==1.7.0"
# AQT (Alpine Quantum Technologies)
uv pip install "cirq-aqt==1.7.0"
# Pasqal
uv pip install "cirq-pasqal==1.7.0"
# Azure: use a SEPARATE environment; its current extras require Cirq <1.7.
uv pip install "qdk[azure,cirq]==1.32.3" "azure-quantum==3.13.0"
Pin all cirq-* packages in an environment to the same release. The Azure
example targets its supported Cirq 1.6.1 stack separately; do not force Cirq 1.7.0
into it. Cirq 1.7.0 updates the IonQ adapter to API v0.4.
Local examples were checked with synthetic circuits. Hardware examples are illustrative and were checked against released source and provider documentation, without submitting cloud jobs. See review evidence.
Quick Start
Basic Circuit
import cirq
import numpy as np
# Create qubits
q0, q1 = cirq.LineQubit.range(2)
# Build circuit
circuit = cirq.Circuit(
cirq.H(q0), # Hadamard on q0
cirq.CNOT(q0, q1), # CNOT with q0 control, q1 target
cirq.measure(q0, q1, key='result')
)
print(circuit)
# Simulate
simulator = cirq.Simulator(seed=42)
result = simulator.run(circuit, repetitions=1000)
# Display results
print(result.histogram(key='result'))
What ships with it
7 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 14d ago Changed · -14 lines 6ab4c57fd133
- 15d ago Changed · +6 lines 6ccc7420aa13
- 1mo ago Changed · +16 lines 73b8e6e5da2b
- 1mo ago First seen · 371 lines · 67 tokens per session scan A 80df5ee951c8
cirq is a skill published in the GitHub repository K-Dense-AI/scientific-agent-skills (50,453 stars, last pushed today), licensed MIT. It adds 67 tokens to every session and 3,218 once invoked, about $0.0003 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
Other skills, from other repositories
discovery-toolbox
A routed repertoire of 90 scientific thinking operators for biological research agents - visual reasoning, detectability and information budgets, search reframing, causal identification, competing explanations, observation and selection processes, pipeline artifact diagnosis, effort allocation, and confirmation…
discovery-director
Operate as a research director making original discoveries from a given biological question and dataset. Use when the task is open-ended scientific research, exploring omics or experimental data for findings, hypothesis generation and testing, screening a large candidate space of genes, variants, features or…
bio-interdomain-hgt
Detect and polarize interdomain horizontal gene transfer with reciprocal hits, genomic context, and gene trees. Use for virus-host gene exchange, endogenous viral elements, or donor direction.
csag-extraction
Extract a Conditional Scientific Argumentation Graph and grounded Q&A from a manuscript. Use when representing assertions, contexts, evidence links, and inference steps in machine-readable form.
notebooks
Author, run and convert marimo or Jupyter notebooks. Use when delivering an analysis notebook executed end to end with figures embedded.
bio-annotation
Annotate proteins with functions, domains, and homology-based taxonomy. Use when assigning functional or taxonomic labels to proteins from genomes, contigs, or MAGs.