pymoo

pymoo is a skill for Claude Code from K-Dense-AI/scientific-agent-skills. It costs 46 tokens per session (2,682 once invoked), scanned A, original, MIT.

A Python framework for solving optimization problems with one or more competing goals. It includes evolutionary methods and can show Pareto fronts, which are sets of choices where improving one goal would worsen another.

In plain words
What is it for?
Use it to run single- or multi-objective optimization, compare trade-offs, apply methods such as NSGA-II or MOEA/D, and test optimization algorithms.
Why use it?
It helps when there is no single best answer, such as balancing cost, weight, speed, and reliability, and also handles constraints and benchmark problems.

Skill for Claude Code

Written for Claude Code: allowed-tools in frontmatter.

Good fit Use it to run single- or multi-objective optimization, compare trade-offs, apply methods such as NSGA-II or MOEA/D, and test optimization algorithms.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/k-dense-ai/scientific-agent-skills/pymoo
About the project

Scientific Agent Skills is a collection of reusable procedures that give AI agents capabilities for scientific research across areas such as biology, chemistry, medicine, and drug discovery. It is used by researchers and by people building AI scientist workflows with compatible coding agents. The catalogue contains many of the project's skills and supporting instructions.

K-Dense-AI/scientific-agent-skills · 44,220 stars · on GitHub · arxiv.org

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add K-Dense-AI/scientific-agent-skills --skill pymoo
Clone the repo
git clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skills

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for pymoo

README.md
[![agentmods](https://agentmods.dev/badge/skills/k-dense-ai/scientific-agent-skills/pymoo/github.svg)](https://agentmods.dev/skills/k-dense-ai/scientific-agent-skills/pymoo)
Your own site
<a href="https://agentmods.dev/skills/k-dense-ai/scientific-agent-skills/pymoo"><img src="https://agentmods.dev/badge/skills/k-dense-ai/scientific-agent-skills/pymoo/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for pymoo

Your own site · 80×15
<a href="https://agentmods.dev/skills/k-dense-ai/scientific-agent-skills/pymoo"><img src="https://agentmods.dev/badge/skills/k-dense-ai/scientific-agent-skills/pymoo.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 46 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,682 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • Socket pass 9 Apr 2026
  • Snyk pass 9 Apr 2026
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00046 $0.02682
Opus 5 $0.00023 $0.01341
Sonnet 5 $0.00009 $0.00536
Haiku 4.5 $0.00005 $0.00268

Measured 8d ago against content hash bc5152f58681, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-11, from the pricing page.

Security

Grade A, and why

pymoo scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 8d ago.

The scan reads SKILL.md. This mod also ships 5 executable files (scripts/custom_problem_example.py, scripts/decision_making_example.py, scripts/many_objective_example.py, …), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

Origin

Copies of this mod

1 near-identical copy found in the catalogue:

  • pymoo — 91% identical, 19 lines differ
skills/pymoo/SKILL.md · 294 lines

How it starts

The opening of the file, as written. The whole thing — 294 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Pymoo - Multi-Objective Optimization in Python

Overview

Pymoo is a comprehensive Python framework for optimization with emphasis on multi-objective problems. Solve single and multi-objective optimization using state-of-the-art algorithms (NSGA-II/III, MOEA/D, SPEA2), benchmark problems (ZDT, DTLZ), customizable genetic operators, and multi-criteria decision making methods. Excels at finding trade-off solutions (Pareto fronts) for problems with conflicting objectives. Current stable release: pymoo 0.6.1.6 (November 2025).

Installation

uv pip install pymoo

For reproducible environments, pin a version: uv pip install "pymoo==0.6.1.6".

Dependencies: NumPy (2.x compatible since 0.6.1.3), SciPy, matplotlib (visualization). Autograd is optional for gradient-based features (since 0.6.1.3).

Documentation: https://pymoo.org/ — LLM-friendly index: https://pymoo.org/llms.txt

When to Use This Skill

This skill should be used when:

  • Solving optimization problems with one or multiple objectives
  • Finding Pareto-optimal solutions and analyzing trade-offs
  • Implementing evolutionary algorithms (GA, DE, PSO, NSGA-II/III)
  • Working with constrained optimization problems
  • Benchmarking algorithms on standard test problems (ZDT, DTLZ, WFG)
  • Customizing genetic operators (crossover, mutation, selection)
  • Visualizing high-dimensional optimization results
  • Making decisions from multiple competing solutions
  • Handling binary, discrete, continuous, or mixed-variable problems

Core Concepts

The Unified Interface

Pymoo uses a consistent minimize() function for all optimization tasks:

from pymoo.optimize import minimize

result = minimize(
    problem,        # What to optimize
    algorithm,      # How to optimize
    termination,    # When to stop
    seed=1,
    verbose=True
)

Result object contains:

  • result.X: Decision variables of optimal solution(s)
  • result.F: Objective values of optimal solution(s)
  • result.G: Constraint violations (if constrained)
  • result.algorithm: Algorithm object with history

Read the full file on GitHub · 294 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 8d ago First seen · 294 lines · 46 tokens per session scan A bc5152f58681

Subscribe to this mod's changes

pymoo is a skill published in the GitHub repository K-Dense-AI/scientific-agent-skills (44,220 stars, last pushed 4d ago), licensed MIT. It adds 46 tokens to every session and 2,682 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.

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