Scientific Agent Skills is a collection of reusable procedures that give AI agents capabilities for scientific research across areas such as biology, chemistry, medicine, and drug discovery. It is used by researchers and by people building AI scientist workflows with compatible coding agents. The catalogue contains many of the project's skills and supporting instructions.
Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add K-Dense-AI/scientific-agent-skills --skill uncertainty-and-unitsgit clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skillsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/k-dense-ai/scientific-agent-skills/uncertainty-and-units)<a href="https://agentmods.dev/skills/k-dense-ai/scientific-agent-skills/uncertainty-and-units"><img src="https://agentmods.dev/badge/skills/k-dense-ai/scientific-agent-skills/uncertainty-and-units/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/k-dense-ai/scientific-agent-skills/uncertainty-and-units"><img src="https://agentmods.dev/badge/skills/k-dense-ai/scientific-agent-skills/uncertainty-and-units.svg" alt="Reviewed on agentmods" width="80" height="20"></a>- Socket pass
- Snyk pass
- NVIDIA SkillSpector pass
What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00167 | $0.05110 |
| Opus 5 | $0.00084 | $0.02555 |
| Sonnet 5 | $0.00033 | $0.01022 |
| Haiku 4.5 | $0.00017 | $0.00511 |
Grade A, and why
uncertainty-and-units scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 402 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Uncertainty and units
Scope
Use this skill whenever a calculation carries physical units or a reported number needs an uncertainty. Concretely:
- converting between units, including conversions that need a physical context (wavelength to photon energy, mass to amount of substance, energy to temperature);
- propagating uncertainty through a measurement model, with or without correlated inputs;
- building a GUM uncertainty budget from calibration certificates, specifications, and repeatability data;
- choosing a coverage factor and deciding whether
k = 2is defensible; - rounding and writing a result so a reader knows what the
±means; - extracting parameter uncertainties from a curve fit without discarding correlations;
- reviewing existing analysis code for silent unit and uncertainty defects;
- checking that a dimensionally consistent answer is also physically possible — the order of magnitude, the dimensionless group, and the regime it implies.
This skill covers the metrology and the two libraries that implement it. It does not
cover statistical inference, model selection, or study design — see statistical-analysis,
statistical-power, and experimental-design.
Current release and installation
Verified 2026-07-26:
- pint 0.25.3, released 2026-03-19; requires Python 3.11+.
- uncertainties 3.2.3, released 2025-04-21; requires Python 3.8+.
- NumPy 2.5.1 and SciPy 1.18.0; both require Python 3.12+.
scipy.constantsin SciPy 1.18.0 serves CODATA 2022. SciPy 1.11 and earlier served CODATA 2018, and several recommended values differ between them.
uv venv --python 3.13
source .venv/bin/activate
uv pip install "pint==0.25.3" "uncertainties==3.2.3" "numpy==2.5.1" "scipy==1.18.0"
pint-pandas and pint-xarray add unit-aware columns and arrays and are separate
installs.
Non-negotiable workflow
- Attach units at input and strip them only at output. Convert at function
boundaries with
ureg.wrapsorm_as("unit"), never mid-calculation. - Write the measurement model explicitly before computing anything, including corrections whose estimated value is zero. A correction left out of the model leaves its uncertainty out of the budget.
- Give every input four things: an estimate, a standard uncertainty, the distribution the uncertainty came from, and its degrees of freedom.
- Convert Type B statements with the right divisor. A certificate's expanded
uncertainty divides by its stated
k; rectangular limits divide bysqrt(3). - Identify correlations before combining. Inputs calibrated against the same standard, measured on the same instrument, or drawn from the same fit are correlated.
- Compute sensitivity coefficients, and read the budget from
c_i * u(x_i)rather than from the raw uncertainties. - Check the linearization. Run Monte Carlo alongside the GUM framework and apply the JCGM 101 clause 8 comparison. Report the Monte Carlo result when it fails.
- Choose
kfrom the effective degrees of freedom, not by habit. - Round the uncertainty first, then the value to the same decimal place.
- State what the
±is — standard or expanded, withk, the coverage probability, and the method. - Sanity-check the magnitude before reporting. A dimensionally consistent result can still be impossible. Compare it against a known scale or a dimensionless group, and confirm every assumption you relied on still holds in that regime.
What ships with it
13 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
- references/domain-conversions.md 8.4 KB
- references/gum-methodology.md 9.8 KB
- references/pint-recipes.md 7.9 KB
- references/plausibility-scales.md 9.3 KB
- references/reporting-rules.md 6.4 KB
- references/uncertainties-recipes.md 6.5 KB
- scripts/_common.py 21 KB runs code
- scripts/audit_units.py 21 KB runs code
- scripts/check_plausibility.py 34 KB runs code
- scripts/convert_units.py 10 KB runs code
- scripts/format_result.py 11 KB runs code
- scripts/propagate_uncertainty.py 26 KB runs code
- scripts/uncertainty_budget.py 13 KB runs code
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 9d ago First seen · 402 lines · 167 tokens per session scan A efe9d01c2552
uncertainty-and-units is a skill published in the GitHub repository K-Dense-AI/scientific-agent-skills (44,469 stars, last pushed yesterday), licensed MIT. It adds 167 tokens to every session and 5,110 once invoked, about $0.0008 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.
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