Auto-sci-research: End-to-end research writing, literature reviews, bibliometrics, GIS exposure assessment, ML/XAI, and SCI writing Skills for geography and sports science with Codex.
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Lzy599775/agent-auto-sci-skills
Skill Claude Code
Explain and audit machine-learning predictions with SHAP. Use for selecting SHAP explainers and maskers, computing and validating feature attributions, handling multi-output explanations, and producing local or global SHAP visualizations.
Lzy599775/agent-auto-sci-skills
Skill Claude Code
Zero-shot time series forecasting with Google's TimesFM foundation model. Use for any univariate time series (sales, sensors, energy, vitals, weather) without training a custom model. Supports CSV/DataFrame/array inputs with point forecasts and prediction intervals. Includes a preflight system checker script to verify…
Lzy599775/agent-auto-sci-skills
Skill Claude CodeCodex
PyTorch Geometric (PyG) for graph neural networks — node/link/graph classification, message passing (GCN, GAT, GraphSAGE, GIN), heterogeneous graphs, neighbor sampling, and custom datasets. Use when working with torchgeometric, not for general NetworkX analytics or non-graph PyTorch models.
Lzy599775/agent-auto-sci-skills
Skill Claude Code
Hugging Face Transformers for loading Hub models, running pipeline inference, text generation, and Trainer fine-tuning on NLP, vision, audio, and multimodal tasks. Use when working with AutoModel, pipelines, tokenizers, or TrainingArguments—not for general ML outside the Transformers library.
Lzy599775/agent-auto-sci-skills
Skill Claude CodeCodex
Use UMAP-learn for nonlinear dimensionality reduction, 2D/3D embeddings, clustering preprocessing, supervised or semi-supervised UMAP, DensMAP, AlignedUMAP, and Parametric UMAP workflows.
Lzy599775/agent-auto-sci-skills
Skill Codex
A toolkit for scientific communication, including research writing, peer review, literature reviews, citation management, slides, posters, and scientific diagrams. It is adapted for geography and sports-science research.
Lzy599775/agent-auto-sci-skills
Skill Claude Code
Comprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or…
Lzy599775/agent-auto-sci-skills
Skill Claude Code
Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, figure integration, and poster-specific best practices for visual communication.
Lzy599775/agent-auto-sci-skills
Skill Claude Code
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthesis, or comprehensive literature searches across biomedical, scientific, and…
Lzy599775/agent-auto-sci-skills
Skill Claude Code
Comprehensive markdown and Mermaid diagram writing skill. Use when creating any scientific document, report, analysis, or visualization. Establishes text-based diagrams as the default documentation standard with full style guides (markdown + mermaid), 24 diagram type references, and 9 document templates.
Lzy599775/agent-auto-sci-skills
Skill Claude CodeCodex
Prepare evidence-bounded, constructive peer-review drafts and structured manuscript assessments. Use for authorized review of scientific manuscripts, protocols, preprints, or research proposals; reporting-guideline selection; claim–evidence checks; methods, statistics, reproducibility, ethics, figure/table, and…
Lzy599775/agent-auto-sci-skills
Skill Claude Code
Create and audit editable scientific posters in macro-free PowerPoint (.pptx) from author-approved local content and assets. Use when the requested deliverable is a PowerPoint research/conference poster and exact physical, printer, accessibility, provenance, and package-security checks are required.
Lzy599775/agent-auto-sci-skills
Skill Claude Code
Create publication-quality scientific diagrams using Nano Banana 2 AI with smart iterative refinement. Uses Gemini 3.6 Flash for quality review. Only regenerates if quality is below threshold for your document type. Specialized in neural network architectures, system diagrams, flowcharts, biological pathways, and…
Lzy599775/agent-auto-sci-skills
Skill Claude Code
Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design templates, timing guidance, and visual validation. Works with PowerPoint and…
Lzy599775/agent-auto-sci-skills
Skill Claude CodeCodex
Draft, revise, and audit scientific manuscripts or reports with explicit evidence provenance, reporting-guideline coverage, authorship accountability, confidentiality controls, and local consistency checks. Use for manuscript sections, references, declarations, tables, figures, or submission preparation when…
Lzy599775/agent-auto-sci-skills
Skill Codex
A scientific data-visualization adviser that examines a dataset before recommending and creating a chart. It makes publication-ready charts for research papers using common data-plot types.
Lzy599775/agent-auto-sci-skills
Skill Codex
An academic writing and editing assistant for research papers in English and Chinese. It covers translation, proofreading, rewriting, paper sections, reviewer checks, cover letters, and responses to reviewers.
Lzy599775/agent-auto-sci-skills
Skill Codex
Use for geography + sport science review manuscripts and bibliometric/scientometric papers, especially topics involving sports parks, sports facilities, active recreation infrastructure, urban parks, green space exposure, green equity, heat exposure, urban health, environmental justice, accessibility, spatial equity…
Lzy599775/agent-auto-sci-skills
Skill Codex
A writing assistant for research papers about sports geography, urban spaces, environmental exposure, access, and fairness. SCI is a group of academic journals indexed by the Science Citation Index.
Lzy599775/agent-auto-sci-skills
Skill Codex
A Chinese-language workflow for research reviews and frontier scanning across geography, sports, urban health and remote sensing. Remote sensing means studying places using data collected by satellites or other sensors.
Lzy599775/agent-auto-sci-skills
Skill Claude CodeCodex
ARS-Codex workflows for research, academic writing, manuscript review, research-to-paper pipelines, and experiment planning. Use when the user asks for deep research, literature review, systematic review, meta-analysis, research question refinement, academic paper drafting, paper revision, citation or integrity…
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