15,298 mods in this category, of every kind an agent can take. Each one carries what it costs per session, what the scan found, and whether it is the original.
Skill Claude CodeCodex
Automatic context checkpointing via the ctxfile MCP tools. Use throughout every session - at session start (load context), when tasks complete or decisions are made (checkpoint), and when the user hands work off or says goodbye.
smaniches/alphafold-sovereign-mcp
MCP server Claude CodeCodexCursor +2
MCP server wrapping AlphaFold DB and 8 other biomedical data sources, with a local SQLite knowledge graph. Runs locally from the alphafold-sovereign-mcp Python package.
MCP server Claude CodeCodexCursor +2
MCP server for querying BrainKB, a knowledge base for neuroscience knowledge graphs. Remote server at mcp.brainkb.org.
Skill Claude CodeCodex
An automation guide for Veusz, a free scientific charting program similar to Origin, using Python scripts.
Skill Claude CodeCodex
Comprehensive Seurat v5 (R) guide for single-cell RNA-seq and multimodal analysis. Covers installation, standard workflows (Normalize/SCTransform), clustering, integration (CCA/RPCA/Harmony), differential expression (FindMarkers/FindAllMarkers), visualization (DimPlot/FeaturePlot/VlnPlot/DoHeatmap), spatial…
zhoy0409-debug/polish-sci-figures
Skill Codex
A final review and preparation workflow for scientific figures, including charts, image panels, manuscripts, slides, and posters.
MrSGSA/math-modeling-skill-dify
Skill Codex
An independent red-team review for mathematical models and the code and evidence behind them. Red-team review means actively looking for failures rather than only confirming the author's claims.
Skill Codex
Use when working on classical biomolecular molecular dynamics with GROMACS: system setup, pdb2gmx/topology preparation, ligand parameterization, solvation and ions, energy minimization, NVT/NPT equilibration, production MD, trajectory analysis, MM/PBSA-style post-processing, .mdp parameter review, GROMACS command…
Skill Codex
Use this skill when the user wants to review, verify, or revise a TeX or PDF research paper by checking whether claims, tables, figures, citations, and conclusions are actually supported by code, experiment runs, logs, and reproducible evidence. The manuscript must not be more confident than the experiments.
Skill Claude CodeCodex
Use when the user needs structured research synthesis, literature review planning, cross-domain scientific critique, citation auditing, adversarial review, research dossier generation, or evidence-grounded decision support. Themis creates a research workroom with dynamic specialist agents, citation firewalling, peer…
Skill Claude CodeCodex
Follow the standards of SynthKernel architecture. Must use this skill when operating on any project that claims to adopt SynthKernel.
khshanovskyi/custom-agent-skills
Skill Claude Code
Converts values between units of measurement across categories: length (km, miles, feet, inches), weight (kg, lbs, oz, stone), temperature (Celsius, Fahrenheit, Kelvin), volume (liters, gallons, cups, ml), area (m², acres, ft²), speed (km/h, mph, knots), time (seconds to years), data storage (bytes to petabytes)…
Plugin Claude Code
Bundles 10 skills, 1 command · 1,158 tokens together
AI-powered bioprotocol generation and lab workflow management. Connect to the Elnora AI Platform to generate, optimize, and manage bioprotocols for wet-lab experiments.
svd-ai-lab/sim-plugin-workbench
Skill Claude CodeCodex
Use when the user asks Codex, Claude Code, ChatGPT-style coding agents, or another AI agent to connect to Ansys Workbench through sim-cli. Supports Workbench journal execution, project inspection, persistent sessions, Mechanical handoff, bounded execution, artifact reporting, and troubleshooting. Requires a user-owned…
huggingface/physics-intern-claude-plugin
Plugin Claude Code ✓ vendor
Bundles 1 skill, 7 agents · 367 tokens together
Scaffold a PhysicsIntern research workspace in the current folder (Claude Code).
aws-samples/sample-healthomics-agentic-setup
Skill Claude Code ✓ vendor
AWS HealthOmics workflow development, migration, running, and debugging using the HealthOmics MCP server.
crcresearch/llm-wiki-memory-template
Skill Claude Code
File experiment results to the wiki following the SCHEMA Ingest procedure. Use after an experiment run produces metrics, ablations, or comparisons worth keeping as durable project memory.
Cursor rule Cursor
Author or modify a Viash component (config.vsh.yaml + script) for an OpenProblems method, especially a taskistpreprocessing stage. Use when the user wants to add/implement a spatial method, scaffold a component, or fix a config.vsh.yaml.
Kernel-Science/physlibsearch-skill
Skill Claude CodeCodex
Semantic search over Physlib, a formal Lean 4 library of physics theorems and definitions. Use when asked to find Lean 4 declarations related to physics or mathematics, look up formal proofs, retrieve theorem signatures, or browse the Physlib module hierarchy.
Plugin Claude Code
Bundles 7 skills, 1 command, 2 agents · 493 tokens together
Plugin for using ClaudeCode to create HEP Analyses.
Plugin Claude Code
Bundles 1 skill, 8 agents · 400 tokens together
A staged workflow for reproducing quantitative research reports, which present numerical analysis such as financial or market research. It uses defined review stages and specialist roles for the reproduction process.
Skill Claude CodeCodex
Mathematical computations and word problems, statistical analysis, data visualization, charting, and quantitative data processing tasks. Use when the user requests mathematical calculations, statistical analysis, data visualization, charting, or quantitative data processing.
AnirudhaRamesh/experiment-automation-claude-code-plugin
Plugin Claude Code
Bundles 9 skills, 6 agents · 993 tokens together
Iterative AIChor experiment automation with auto-diagnosis, fix, and retry.
Plugin Claude Code
Bundles 3 skills, 3 commands, 1 hook · 264 tokens together
PACE HPC plugin in the gt-hive marketplace. Layered skills for Georgia Tech PACE: slurm-core (portable Slurm), pace-phoenix (Phoenix overlay), pace-ice (ICE overlay). Job scripting, storage navigation, GPU resource selection, troubleshooting, and templates for ML training and batch computing workflows on Georgia Tech…
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: