Diagnose why Claude Code is (or isn't) prompting for permission. By default reads only repo-local layers (CLI project, CLI project-local, VSCode workspace). Host-global layers (CLI user /.claude/, VSCode user settings) are read ONLY when the user explicitly confirms — those files may contain unrelated paths or…
Compute statistical power, required sample size, and minimum detectable effect (MDE) for a study design, then write a registry-ready power section. Handles two-arm RCTs (with clustering / ICC and unequal allocation), multiple-arm corrections, and a simulation-based power option for non-standard designs…
Draft a structured preregistration document (OSF, AsPredicted, or AEA RCT Registry style) from a research spec or free-form study description. Output is a Markdown file with hypotheses, design, sampling plan, analysis plan, exclusions, and inference criteria — annotated with MUST / SHOULD / MAY clarity flags. Use when…
Review candidate learnings in Claude Code's native auto memory (/.claude/projects/ /memory/, machine-local) and run them through a five-critic council in parallel: generality, staleness, redundancy, evidence, format. Majority vote (3+ of 5) promotes the entry to MEMORY.md. Use when user says "promote memory", "review…
Read-only proofreading pass over lecture .tex or .qmd files. Checks grammar, typos, overflow, terminology consistency, and academic writing quality; produces a report without editing. Use when user says "proofread", "check for typos", "look for grammar issues", "copy-edit this", "any writing errors?", or before a…
Adversarial Quarto-vs-Beamer parity QA. A critic agent compares the Quarto HTML render to the Beamer PDF benchmark for content/visual parity; a fixer agent applies fixes; loops until APPROVED or two consecutive rounds turn up nothing new (fallback cap 5 rounds). Use when user says "qa the quarto", "check parity"…
Run the full R package release gate — regenerate docs, run the test suite, run R CMD check --as-cran, and triage every ERROR / WARNING / NOTE against CRAN policy before a release or submission. Use when the user says "check my R package", "R CMD check", "is this package CRAN-ready", "run devtools::check", "prepare for…
Assemble a submission-ready replication package to the AEA Data and Code Availability Standard (DCAS) / openICPSR / Social Science Reproduction Platform expectations — standard replication README, dataset manifest, computational-requirements capture, a Table/Figure → script:line map, and a confidential-data deposit…
Generate structured research questions, testable hypotheses, and candidate empirical strategies from a topic, phenomenon, or dataset description. Use when user says "give me research ideas on X", "brainstorm questions about Y", "what could I study with this data?", "I'm looking for a paper idea on...", "generate…
Turn student course evaluations (free-text + numeric) into an actionable teaching-improvement plan — the teaching analogue of /respond-to-referees. Clusters comments into themes, separates signal from noise, classifies each theme Keep / Change / Investigate / Out-of-scope, and drafts concrete changes mapped to the…
Generate a structured response-to-referees document from a referee report and the revised manuscript. Maps each referee comment to the specific revision, classifies coverage (addressed / partially / deferred / disagreement), and drafts polite but firm responses. Use during the R&R (revise-and-resubmit) stage of paper…
Read-only R code review protocol for .R scripts. Checks code quality, reproducibility, domain correctness, tidyverse idioms, and professional standards; produces a report without editing. Use when user says "review this R script", "check the R code", "audit the analysis code", "code review on the R", or when an R file…
Scaffold a graded problem set with sections, problems, worked solutions, and short "why this matters" explainers across analytical, empirical, and coding types. Use when user says "make a problem set on X", "scaffold exercises for this lecture", "create practice problems", "generate homework with a solution key"…
Mechanize Pattern 15 — the seven-pass adversarial review protocol for academic manuscripts. Spawns 7 fresh-context subagents in parallel (abstract, intro, methods, results, robustness, prose, citations), then synthesizes a prioritized revision checklist. Use for submission-ready or R&R-stage papers where single-pass…
Scaffold and run a reproducible Monte Carlo simulation study in R — a declared assumption regime, a parameterized DGP, an estimator grid, a seeded replication loop, and a summary of bias, RMSE, empirical SE, coverage, size/power with Monte Carlo standard errors. Use when the user says "run a Monte Carlo simulation"…
End-to-end Stata replication pipeline — scaffolds numbered .do files in scripts/stata/, executes them via the stata-mcp MCP server, captures logs and outputs to output/, and produces publication-ready tables (esttab) and figures (graph export). Mirrors /data-analysis for R-first projects. Use when user says "stata…
Generate the submission-time disclosure block for a manuscript — the AI-use disclosure statement matched to the target journal's policy, CRediT author-contribution roles, conflict-of-interest statement, and data-availability statement. Use when the user says "AI disclosure", "disclosure statement", "do I need to…
Build or restructure a course syllabus from a topic list or reading list — course description + prerequisites, week-by-week schedule (topic → readings → deliverables), measurable learning objectives, an assessment scheme + rubric, standard policies (late work, AI use, academic integrity, accessibility), and a per-week…
Turn a research paper into teaching materials — a lecture outline, the 3-5 results worth presenting (with intuition), a slide skeleton ready for /create-lecture, discussion questions, and a problem-set brief. Reads the paper end-to-end and pitches to a stated audience level. Use when user says "turn this paper into a…
Translate a Beamer .tex lecture to a Quarto RevealJS .qmd mirror. Multi-phase: TikZ extraction → slide-by-slide translation → citation conversion → automatic QA parity check. Use when user says "translate to quarto", "port to revealjs", "make an html version", "convert this beamer to quarto", "mirror this lecture in…
Triage academic email and calendar (Gmail / Google Calendar via the session's MCP) into a prioritized digest plus a referee-obligations tracker — classifying referee requests, R&R and editor correspondence, co-author threads, seminar and conference invites, and grant/admin deadlines, and proposing a human-gated action…
Qualify a check before it is allowed to clear anything — prove it can detect the failure it is meant to catch. Seeds known defects into a copy of a real artifact plus a clean control, runs the checker, and reports recall and false-positive rate into a qualification ledger. Use when the user says "does this check…
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: