bioinformatics instructions files

omics-skills AGENTS.md

25

Instructions file CodexOpenCode

Instructions for fmschulz/omics-skills, covering agents.md, repository overview, default workflow selection, scientific workflow guardrails and literature-derived discovery guardrails.

not rated 7 11d ago A 2,901 tokens original MIT

CellTypePilot AGENTS.md

26

HERRY423/CellTypePilot

Instructions file Claude CodeCodexOpenCode

Instructions for HERRY423/CellTypePilot, covering celltypepilot — codex agent instructions, when to use, prerequisites, workflow — four stages and stage 1: inspect the data.

not rated 5 12d ago A 4,451 tokens original MIT

cryocore AGENTS.md

27

BioSymphony/cryocore

Instructions file CodexOpenCode

AGENTS.md instructions for BioSymphony/cryocore, covering biosymphony cryocore agent guide, operating rules, ownership boundary, dev commands and key patterns and conventions.

not rated 5 4d ago A 945 tokens original MIT

structure-factory AGENTS.md

28

BioSymphony/structure-factory

Instructions file CodexOpenCode

AGENTS.md instructions for BioSymphony/structure-factory, covering biosymphony structure factory agent guide, mission, how to drive a mission, provider contract coverage and orchestrators supported.

not rated 5 changed yesterday A 1,404 tokens original MIT

protein-mcp-server AGENTS.md

29

cyanheads/protein-mcp-server

Instructions file Claude CodeCodexOpenCode

Instructions for cyanheads/protein-mcp-server, covering developer protocol, what's next?, core rules, patterns and tool.

not rated 5 6d ago A 6,834 tokens copy · 81% Apache-2.0

GrEBI AGENTS.md

30

EBISPOT/GrEBI

Instructions file CodexOpenCode

AGENTS.md instructions for EBISPOT/GrEBI: The docs in docs/ provide a good introduction to GrEBI which you should read first.

not rated 4 yesterday A 271 tokens original Apache-2.0

open-genome-agent AGENTS.md

31

45ck/open-genome-agent

Instructions file CodexOpenCode

Instructions for 45ck/open-genome-agent, covering agents.md, core policy, mission, mandatory rules and delegation rules.

not rated 4 2mo ago A 712 tokens original MIT

brapi-mcp-server AGENTS.md

32

cyanheads/brapi-mcp-server

Instructions file Claude CodeCodexOpenCode

Instructions for cyanheads/brapi-mcp-server, covering agent protocol, what's next?, core rules, patterns and tool — connection bootstrap.

not rated 3 14d ago A 8,118 tokens original Apache-2.0

scholion CLAUDE.md

33

CrossRead/scholion

Instructions file Claude Code

Claude Code instructions for CrossRead/scholion, covering claude.md — project context for a new session, first of all, running it, architecture, the parts that matter and language.

not rated 3 5d ago A 3,640 tokens original Apache-2.0

bio-gene-to-reference-tree copilot-instructions.md

34

Hongda-Zhao/bio-gene-to-reference-tree

Instructions file GitHub Copilot

Copilot instructions for Hongda-Zhao/bio-gene-to-reference-tree, a project described as: Auditable agent skill for resolving protein queries, selecting references, and planning reproducible phylogenetic trees.

not rated 3 11d ago A 105 tokens original MIT

genefoundry-router AGENTS.md

35

berntpopp/genefoundry-router

Instructions file CodexOpenCode

AGENTS.md instructions for berntpopp/genefoundry-router, covering agents.md, what this project is, required check before handoff, coding standards and project-specific guidance.

not rated 3 +1 changed yesterday A 1,509 tokens original MIT

ensembl-mcp-server AGENTS.md

36

cyanheads/ensembl-mcp-server

Instructions file Claude CodeCodexOpenCode

Instructions for cyanheads/ensembl-mcp-server, covering developer protocol, what's next?, core rules, patterns and tool.

not rated 2 14d ago A 6,063 tokens copy · 78% Apache-2.0

preprint-fulltext copilot-instructions.md

37

genecell/preprint-fulltext

Instructions file GitHub Copilot

Copilot instructions for genecell/preprint-fulltext, covering preprint-fulltext, when to use, why full text (for grounded reasoning), cli and python.

not rated 2 1mo ago A 1,481 tokens

boltz_mcp CLAUDE.md

38

MacromNex/boltz_mcp

Instructions file Claude Code

Claude Code instructions for MacromNex/boltz_mcp, covering claude.md, what this is, setup, local (conda) and options: --skip-env, --skip-repo.

not rated 2 5mo ago B 1,890 tokens

bindcraft_mcp CLAUDE.md

39

MacromNex/bindcraft_mcp

Instructions file Claude Code

Claude Code instructions for MacromNex/bindcraft_mcp, covering claude.md, project overview, common commands, setup environment and run the mcp server.

not rated 2 6mo ago A 737 tokens

boltzgen_mcp CLAUDE.md

40

MacromNex/boltzgen_mcp

Instructions file Claude Code

Claude Code instructions for MacromNex/boltzgen_mcp, covering claude.md, what this is, setup, running and start mcp server.

not rated 2 6mo ago A 1,058 tokens

gnomad-genetics-mcp-server AGENTS.md

41

cyanheads/gnomad-genetics-mcp-server

Instructions file Claude CodeCodexOpenCode

AGENTS.md instructions for cyanheads/gnomad-genetics-mcp-server, covering developer protocol, core rules, patterns, server config (src/config/server-config.ts) and server identity and instructions.

not rated 1 5d ago A 6,274 tokens copy · 78% Apache-2.0

alphafold3_mcp CLAUDE.md

42

MacromNex/alphafold3_mcp

Instructions file Claude Code

Claude Code instructions for MacromNex/alphafold3_mcp, covering claude.md, project overview, common commands, run the mcp server and run tests.

not rated 1 5mo ago A 1,023 tokens

Heuris-BioMCP CLAUDE.md

43

SachinGawande2003/Heuris-BioMCP

Instructions file Claude Code

Claude Code instructions for SachinGawande2003/Heuris-BioMCP, covering heuris-biomcp agent guidance, what this server is for, recommended workflows, literature and mechanism grounding and translational gene review.

not rated 1 5mo ago A 988 tokens original MIT

mgi-link AGENTS.md

44

berntpopp/mgi-link

Instructions file CodexOpenCode

AGENTS.md instructions for berntpopp/mgi-link, covering agents.md — engineering conventions for mgi-link, golden rules, architecture invariants (do not break), fleet deploy contract and data plane.

not rated 1 changed yesterday A 1,521 tokens

hpo-link AGENTS.md

45

berntpopp/hpo-link

Instructions file CodexOpenCode

AGENTS.md instructions for berntpopp/hpo-link, covering agents.md — hpo-link, what this is, two planes (non-negotiable boundary), architecture: ingest → data dao → services → mcp and invariants.