alphafold

alphafold is a skill for Claude Code, Codex from FridrichMethod/awesome-skills. It costs 100 tokens per session (1,427 once invoked), scanned A, original, no licence file.

A protein-structure prediction workflow using AlphaFold2, an AI system that estimates how a protein sequence folds in three dimensions.

In plain words
What is it for?
It is for validating protein designs, predicting protein or multi-chain complexes, comparing predictions with the intended design, and reviewing measures such as pLDDT, pTM, and ipTM.
Why use it?
It helps check whether a designed protein is likely to fold as intended and whether a designed binder may fit its target. It also provides confidence measures for judging the prediction.

Skill for Claude CodeCodex

Which agent this was written for is unclear — body not stored (licence); the path alone says nothing.

Good fit It is for validating protein designs, predicting protein or multi-chain complexes, comparing predictions with the intended design, and reviewing measures such as pLDDT, pTM, and ipTM.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/fridrichmethod/awesome-skills/alphafold
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add FridrichMethod/awesome-skills --skill alphafold
Clone the repo
git clone --depth 1 https://github.com/FridrichMethod/awesome-skills

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for alphafold

README.md
[![agentmods](https://agentmods.dev/badge/skills/fridrichmethod/awesome-skills/alphafold/github.svg)](https://agentmods.dev/skills/fridrichmethod/awesome-skills/alphafold)
Your own site
<a href="https://agentmods.dev/skills/fridrichmethod/awesome-skills/alphafold"><img src="https://agentmods.dev/badge/skills/fridrichmethod/awesome-skills/alphafold/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for alphafold

Your own site · 80×15
<a href="https://agentmods.dev/skills/fridrichmethod/awesome-skills/alphafold"><img src="https://agentmods.dev/badge/skills/fridrichmethod/awesome-skills/alphafold.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 100 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,427 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00100 $0.01427
Opus 5 $0.00050 $0.00714
Sonnet 5 $0.00020 $0.00285
Haiku 4.5 $0.00010 $0.00143

Measured 6d ago against content hash 97a77e8a727b, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-09, from the pricing page.

Security

Grade A, and why

alphafold scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 6d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/alphafold/SKILL.md · 177 lines

The source is not reproduced here

A licence we could not identify

The repository carries a LICENSE file, but it is custom or dual enough that GitHub cannot name it and neither can this catalogue. Unknown terms are not permission, so the body is not copied here. Read the licence at the source and decide for yourself.

Read it on GitHub

Files

What ships with it

1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 6d ago First seen · 177 lines · 100 tokens per session scan A 97a77e8a727b

Subscribe to this mod's changes

alphafold is a skill published in the GitHub repository FridrichMethod/awesome-skills (14 stars, last pushed 3d ago), with no licence file. It adds 100 tokens to every session and 1,427 once invoked, about $0.0005 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.

Related

Other skills, from other repositories

alphafold

Validate protein designs using AlphaFold2 structure prediction. Use this skill when: (1) Validating designed sequences fold correctly, (2) Predicting binder-target complex structures, (3) Calculating confidence metrics (pLDDT, pTM, ipTM), (4) Self-consistency validation of designs, (5) Multi-chain complex prediction…

BioTender-max/awesome-bio-agent-skills · 100 tokens

alphafold2-multimer

AlphaFold2 / AlphaFold-Multimer structure prediction for validation and confidence scoring. Use this skill when: (1) Validating designed sequences fold correctly, (2) Predicting binder-target complex structures, (3) Calculating confidence metrics (pLDDT, pTM, ipTM), (4) Self-consistency validation of designs, (5)…

BioTender-max/awesome-bio-agent-skills · 117 tokens

alphafold2-multimer

AlphaFold2 / AlphaFold-Multimer structure prediction for validation and confidence scoring. Use this skill when: (1) Validating designed sequences fold correctly, (2) Predicting binder-target complex structures, (3) Calculating confidence metrics (pLDDT, pTM, ipTM), (4) Self-consistency validation of designs, (5)…

zongtingwei/Bioclaw_Skills_Hub · 117 tokens

chai1-structure-prediction

Chai-1 structure prediction for protein complexes and design validation. Use this skill when: (1) Predicting protein-protein complex structures, (2) Validating designed binders, (3) Predicting protein-ligand complexes, (4) Using the Chai API for high-throughput prediction, (5) Need an alternative to AlphaFold2. For QC…

BioTender-max/awesome-bio-agent-skills · 121 tokens

chai

Structure prediction using Chai-1, a foundation model for molecular structure. Use this skill when: (1) Predicting protein-protein complex structures, (2) Validating designed binders, (3) Predicting protein-ligand complexes, (4) Using the Chai API for high-throughput prediction, (5) Need an alternative to AlphaFold2.…

BioTender-max/awesome-bio-agent-skills · 107 tokens

boltz-structure-prediction

Boltz-1 / Boltz-2 structure prediction for proteins, complexes, and ligand-aware validation. Use this skill when: (1) Predicting protein complex structures, (2) Validating designed binders, (3) Need open-source alternative to AF2, (4) Predicting protein-ligand complexes, (5) Using local GPU resources. For QC…

BioTender-max/awesome-bio-agent-skills · 121 tokens