Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add jaechang-hits/SciAgent-Skills --skill snakemake-workflow-enginegit clone --depth 1 https://github.com/jaechang-hits/SciAgent-SkillsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/jaechang-hits/sciagent-skills/snakemake-workflow-engine)<a href="https://agentmods.dev/skills/jaechang-hits/sciagent-skills/snakemake-workflow-engine"><img src="https://agentmods.dev/badge/skills/jaechang-hits/sciagent-skills/snakemake-workflow-engine/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/jaechang-hits/sciagent-skills/snakemake-workflow-engine"><img src="https://agentmods.dev/badge/skills/jaechang-hits/sciagent-skills/snakemake-workflow-engine.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00089 | $0.04889 |
| Opus 5.5 | $0.00036 | $0.01956 |
| Sonnet 5.5 | $0.00018 | $0.00978 |
| Haiku 4.5 | $0.00009 | $0.00489 |
Grade A, and why
snakemake-workflow-engine scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Makes network callslowCapability
Not a fault in itself. Listed so you know the mod talks to something, and to what.
"wget -O {output} https://example.com/genome.fa" The source is not reproduced here
A licence we could not identify
The repository carries a LICENSE file, but it is custom or dual enough that GitHub cannot name it and neither can this catalogue. Unknown terms are not permission, so the body is not copied here. Read the licence at the source and decide for yourself.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 1mo ago First seen · 564 lines · 89 tokens per session scan A 4d0db95dc547
snakemake-workflow-engine is a skill published in the GitHub repository jaechang-hits/SciAgent-Skills (381 stars, last pushed yesterday), with no licence file. It adds 89 tokens to every session and 4,889 once invoked, about $0.0004 per session on Opus 5.5. A static security scan graded it A with 1 finding (makes network calls). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.
Other skills, from other repositories
bioinformatics-on-healthomics
Guides users through bioinformatics analysis on AWS HealthOmics. Covers analysis type selection (alignment, variant calling, QC, interpretation), workflow generation in Nextflow or WDL, container sourcing from public registries, infrastructure setup (S3, ECR, IAM), workflow registration, parameter preparation…
biomcp-research
Do biomedical literature and variant research with the BioMCP CLI, and file what you learn about the tool itself as issues in the biomcp repo.
drug-discovery-search
End-to-end drug discovery platform combining ChEMBL compounds, DrugBank, targets, and FDA labels. Natural language powered by Valyu.
genomics-alignment
Load when computing alignment QC metrics (mapping rate, MAPQ distribution, insert size, duplicate rate, proper-pair rate) from a text SAM file produced by any short-/long-read aligner (BWA / Bowtie2 / Minimap2); convert a BAM with samtools view -h first. Skip when running the alignment step itself; only FASTQ-level QC…
genomics-cnv-calling
Load when calling CNV segments via CBS-style segmentation on a bin-level log2-ratio CSV from exome / WGS coverage — emits per-segment 5-class CN state (amplification / gain / neutral / loss / deepdeletion), per-chromosome summary, genome-fraction-altered. Skip when working with single-cell / spatial CNV (use…
genomics-epigenomics
Load when summarising a peak file (BED / narrowPeak) from ATAC-seq / ChIP-seq / CUT&Tag — peak count, width distribution, per-chromosome counts, score statistics. Skip when calling peaks from BAM (run MACS / Genrich externally first); working with single-cell ATAC (use scatac-preprocessing).