Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add ma-compbio-lab/SkillFoundry --skill psi4-single-point-energygit clone --depth 1 https://github.com/ma-compbio-lab/SkillFoundryWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/ma-compbio-lab/skillfoundry/psi4-single-point-energy)<a href="https://agentmods.dev/skills/ma-compbio-lab/skillfoundry/psi4-single-point-energy"><img src="https://agentmods.dev/badge/skills/ma-compbio-lab/skillfoundry/psi4-single-point-energy/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/ma-compbio-lab/skillfoundry/psi4-single-point-energy"><img src="https://agentmods.dev/badge/skills/ma-compbio-lab/skillfoundry/psi4-single-point-energy.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00043 | $0.00569 |
| Opus 5 | $0.00022 | $0.00284 |
| Sonnet 5 | $0.00009 | $0.00114 |
| Haiku 4.5 | $0.00004 | $0.00057 |
Grade A, and why
psi4-single-point-energy scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 10d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 53 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Purpose
Provide a minimal, runnable Psi4 starter that computes one deterministic single-point energy for a bundled water geometry and records the result as compact JSON.
When to use
- You need a verified local Psi4 entry point.
- You want a tiny quantum-chemistry smoke calculation before scaling to larger molecules or better methods.
- You need a deterministic summary that can be tested in CI-like local workflows.
When not to use
- You need high-accuracy energetics, conformer searches, or production optimizations.
- You need solvent models, post-HF methods, or large basis sets.
Inputs
- Optional output JSON path
- Optional method and basis, defaulting to
hfandsto-3g
Outputs
- JSON summary with Psi4 version, job label, molecule metadata, and single-point energy in Hartree
Requirements
slurm/envs/psi4with Psi4 installed
Procedure
- Run
slurm/envs/psi4/bin/python skills/computational-chemistry-and-molecular-simulation/psi4-single-point-energy/scripts/run_psi4_single_point.py --out skills/computational-chemistry-and-molecular-simulation/psi4-single-point-energy/assets/water_hf_sto3g_summary.json. - Confirm the output reports
psi4_version,method,basis, and a negativeenergy_hartree. - Reuse the script as a seed for larger Psi4 workflows after validating the dedicated prefix.
Validation
- The command exits successfully under
slurm/envs/psi4/bin/python. - The result reports a 3-atom water molecule.
- The
hf/sto-3genergy is reproducible for the bundled geometry.
Failure modes and fixes
- Missing Psi4 prefix: install or reactivate
slurm/envs/psi4. - Import failure: confirm the script is run with
slurm/envs/psi4/bin/python, not the base interpreter. - Numerical drift after edits: reset the geometry, method, basis, and thread count to the bundled defaults.
Safety and limits
- Educational starter only.
- The bundled water calculation is intentionally tiny and not suitable for scientific claims by itself.
What ships with it
8 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 10d ago First seen · 53 lines · 43 tokens per session scan A e500d7dcdcae
psi4-single-point-energy is a skill published in the GitHub repository ma-compbio-lab/SkillFoundry (39 stars, last pushed 4mo ago), licensed Apache-2.0. It adds 43 tokens to every session and 569 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
Other skills, from other repositories
arxiv-search
Skill "arxiv-search" from TaewoooPark/MagLab, covering category scoping, query families (3–6 per topic), version and doi resolution, tier classification and output contract.
literature-search
Broad literature search for magnetism & spintronics — OpenAlex REST query strategy, query family generation, tier classification, and evidencematrix construction (§14.3·§14.7). Activated by the maglab lit search command and the research orchestration search-scout agent.
revision-letter
Point-by-point peer-review response letter workflow for journal resubmission. Invokes RevisionLetterAgent to quote each reviewer comment verbatim, draft a response, and add a change-location marker. Outputs carry HUMAN REVIEW REQUIRED; no auto-send. A DOI or manuscript location is required for every factual response…
physics-oracle
Use when validating the dimensional, range, and conservation-law plausibility of magnetic physics quantities, or when performing deterministic physics formula calculations and unit conversions. Gilbert damping 0≤α≤1 check, M≤Ms, exchange length and domain wall width calculations, Oe↔A/m↔T·emu/cm³↔A/m·Jij meV↔K…
statistical-experimental-evaluation
Design and run statistical experiments that test the formal problem, proposed methods, theoretical predictions, baselines, and ablations.
batch-effect-correction
Use when correcting batch effects in merged bulk expression matrices with sample-level batch metadata while preserving biological group structure and generating before-and-after QC plots. NOT for: single-cell integration, raw FASTQ processing, differential expression without batch labels, or datasets without…