uniprot-sequence-feature-annotation-starter

uniprot-sequence-feature-annotation-starter is a skill for Claude Code, Codex from ma-compbio-lab/SkillFoundry. It costs 0 tokens per session (276 once invoked), scanned A, original, Apache-2.0.

A small tool that retrieves a protein record from UniProt, a public database of protein sequences and biological annotations, and summarizes its sequence features.

In plain words
What is it for?
Use it to fetch an accession and report the protein name, genes, organism, sequence length, annotation score, and representative features.
Why use it?
It turns a large database response into a compact, consistent result that is easier for later workflows to use.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Good fit Use it to fetch an accession and report the protein name, genes, organism, sequence length, annotation score, and representative features.

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Install with agentmods
npx agentmods add skills/ma-compbio-lab/skillfoundry/uniprot-sequence-feature-annotation-starter
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add ma-compbio-lab/SkillFoundry --skill uniprot-sequence-feature-annotation-starter
Clone the repo
git clone --depth 1 https://github.com/ma-compbio-lab/SkillFoundry

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for uniprot-sequence-feature-annotation-starter

README.md
[![agentmods](https://agentmods.dev/badge/skills/ma-compbio-lab/skillfoundry/uniprot-sequence-feature-annotation-starter/github.svg)](https://agentmods.dev/skills/ma-compbio-lab/skillfoundry/uniprot-sequence-feature-annotation-starter)
Your own site
<a href="https://agentmods.dev/skills/ma-compbio-lab/skillfoundry/uniprot-sequence-feature-annotation-starter"><img src="https://agentmods.dev/badge/skills/ma-compbio-lab/skillfoundry/uniprot-sequence-feature-annotation-starter/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for uniprot-sequence-feature-annotation-starter

Your own site · 80×15
<a href="https://agentmods.dev/skills/ma-compbio-lab/skillfoundry/uniprot-sequence-feature-annotation-starter"><img src="https://agentmods.dev/badge/skills/ma-compbio-lab/skillfoundry/uniprot-sequence-feature-annotation-starter.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 0 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 276 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00000 $0.00276
Opus 5 $0.00000 $0.00138
Sonnet 5 $0.00000 $0.00055
Haiku 4.5 $0.00000 $0.00028

Measured 6d ago against content hash 7efe1535e381, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-09, from the pricing page.

Security

Grade A, and why

uniprot-sequence-feature-annotation-starter scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 6d ago.

The scan reads SKILL.md. This mod also ships 2 executable files (scripts/fetch_uniprot_sequence_feature_summary.py, tests/test_fetch_uniprot_sequence_feature_summary.py), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/proteomics/uniprot-sequence-feature-annotation-starter/SKILL.md · 28 lines

What it actually says

UniProt Sequence Feature Annotation Starter

Use this skill to fetch a UniProtKB accession from the official UniProt REST API and summarize its sequence features into compact JSON.

What it does

  • Calls https://rest.uniprot.org/uniprotkb/{accession}.json.
  • Extracts accession, entry ID, protein name, gene names, organism metadata, sequence length, and annotation score.
  • Collapses large feature payloads into stable type counts plus a small set of representative sequence features.

When to use it

  • You need a lightweight starter for protein sequence-feature annotation.
  • You want a deterministic UniProt-backed summary for downstream proteomics or protein biology workflows.

Example

python3 skills/proteomics/uniprot-sequence-feature-annotation-starter/scripts/fetch_uniprot_sequence_feature_summary.py \
  --accession P04637 \
  --out scratch/uniprot/p04637_sequence_features.json

Verification

  • Skill-local tests: python3 -m unittest discover -s skills/proteomics/uniprot-sequence-feature-annotation-starter/tests -p 'test_*.py'
  • Canonical example: python3 skills/proteomics/uniprot-sequence-feature-annotation-starter/scripts/fetch_uniprot_sequence_feature_summary.py --accession P04637
Files

What ships with it

7 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 6d ago First seen · 28 lines · 0 tokens per session scan A 7efe1535e381

Subscribe to this mod's changes

uniprot-sequence-feature-annotation-starter is a skill published in the GitHub repository ma-compbio-lab/SkillFoundry (38 stars, last pushed 4mo ago), licensed Apache-2.0. It costs nothing until one of its globs matches a file; then it loads 276 tokens. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.

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