52 tagged biorxiv, measured the same way as everything else here.
Browse within: life-sciences 35europepmc 33Biomedical 32cyanheads 32
hunter-heidenreich/academic-tools-mcp
Hook Claude Code
Runs after a tool call finishes for Edit, Write and MultiEdit tool calls, executing ruff-format.sh via bash. From hunter-heidenreich/academic-tools-mcp.
hunter-heidenreich/academic-tools-mcp
Settings file Claude Code
Agent settings declaring 1 hook event (PostToolUse).
hunter-heidenreich/academic-tools-mcp
Instructions file
Instructions for hunter-heidenreich/academic-tools-mcp, covering claude.md, what this is, commands, code style & the format-on-edit hook and changelog & versioning.
Plugin Claude Code
Search and retrieve bioRxiv and medRxiv preprints — by DOI, date interval, or keyword — via MCP. STDIO or Streamable HTTP.
Instructions file CodexOpenCode
AGENTS.md instructions for cyanheads/biorxiv-mcp-server, covering agent protocol, what's next?, core rules, patterns and tool.
Instructions file
Claude Code instructions for cyanheads/biorxiv-mcp-server, covering agent protocol, what's next?, core rules, patterns and tool.
Skill Claude CodeCodex
Scaffold a new MCP tool definition. Use when the user asks to add a tool, create a new tool, or implement a new capability for the server.
Skill Claude CodeCodex
Canonical reference for the unified Context object passed to every tool and resource handler in @cyanheads/mcp-ts-core. Covers the full interface, its RequestContext base, all sub-APIs (ctx.log, ctx.state, ctx.requestInput, ctx.inputs, ctx.enrich, ctx.content), and when to use each.
Skill Claude CodeCodex
Design the tool surface, resources, and service layer for a new MCP server. Use when starting a new server, planning a major feature expansion, or when the user describes a domain/API they want to expose via MCP. Produces a design doc at docs/design.md that drives implementation.
MCP server Claude CodeCodexCursor +2
Search and retrieve bioRxiv and medRxiv preprints — by DOI, date interval, or keyword — via MCP. Runs locally from the @cyanheads/biorxiv-mcp-server npm package. Needs 4 environment variables to run.
Plugin Claude Code
Plugin marketplace listing 1 plugin: preprint-fulltext.
Plugin Claude Code
Retrieve full text of bioRxiv/medRxiv/arXiv preprints as structured sections to ground scientific reasoning and deep research, search/discover preprints, and build embedding-ready corpora (Europe PMC + openRxiv S3 + arXiv LaTeXML), via CLI and MCP.
Cursor rule Cursor
Retrieve full text of bioRxiv/medRxiv/arXiv preprints as structured sections to ground scientific reasoning and deep research (methods/results, not just abstracts), or build embedding-ready corpora. Use when a task needs a preprint's full text or sections from a DOI/arXiv id/URL; to verify a claim against a paper's…
Instructions file GitHub Copilot
Copilot instructions for genecell/preprint-fulltext, covering preprint-fulltext, when to use, why full text (for grounded reasoning), cli and python.
Instructions file CodexOpenCode
AGENTS.md instructions for genecell/preprint-fulltext, covering preprint-fulltext, when to use, why full text (for grounded reasoning), cli and python.
Skill Claude CodeCodex
Retrieve full text of bioRxiv/medRxiv/arXiv preprints as structured sections to ground scientific reasoning and deep research (methods/results, not just abstracts), or build embedding-ready corpora. Use when a task needs a preprint's full text or sections from a DOI/arXiv id/URL; to verify a claim against a paper's…
MCP server Claude CodeCodexCursor +2
CLI + MCP toolkit that retrieves full text of bioRxiv/medRxiv/arXiv preprints as structured sections — grounding LLM/agent scientific reasoning and deep research — and builds embedding-ready corpora. Runs locally from the preprint-fulltext Python package. Needs 2 environment variables to run.
MCP server Claude CodeCodexCursor
Anthropic's hosted bioRxiv/medRxiv server: lets the agent search and read life-science preprints. Remote server at gateway.pipeworx.io.
At most 3 mods per repository are shown here — the rest are on their repository pages: