zotero plugin skills

ydeng11/zotero-zotadata

Skill Claude CodeCodex

Compact the current conversation into a handoff document for another agent to pick up.

dralkh/seerai

Skill Claude CodeCodex

Use this skill when working with Brain Imaging Data Structure (BIDS) datasets: organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET, microscopy, NIRS, motion capture, EMG, MR spectroscopy, behavioral), querying BIDS layouts, validating compliance, converting DICOM to BIDS, writing metadata sidecars…

dralkh/seerai

Skill Claude CodeCodex

Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST/BLAT, viral sequence downloads, AlphaFold structures, enrichment analysis, OpenTargets, COSMIC, CELLxGENE, and 8cube mouse specificity/expression data. Best for interactive exploration and simple queries. For batch…

dralkh/seerai

Skill Claude CodeCodex

Query and download public cancer imaging data from NCI Imaging Data Commons using idc-index. Use for accessing large-scale radiology (CT, MR, PET) and pathology datasets for AI training or research. No authentication required. Query by metadata, visualize in browser, check licenses.

mjthoraval/Weavero

Skill Claude CodeCodex

Develop a new Weavero feature end-to-end. Use when the user requests a new feature or capability. Asks structured intake questions, produces a plan for approval, then implements, verifies, and reports autonomously.

mjthoraval/Weavero

Skill Claude CodeCodex

Cut and publish a Weavero release. Use ONLY when the user explicitly approves a release ("start the release", "ok to release"). Runs the full gate battery, squashes the dev line, tags, publishes, and hand-edits the notes.

mjthoraval/Weavero

Skill Claude CodeCodex

The Weavero build-install-verify cycle. Use after any src/ change to get the new code running and proven in the live Zotero. Also the reference for version bumping and test-suite etiquette.

X1AOX1A/ZoFiles

Skill Claude CodeCodex

How to read and work with academic paper folders exported by ZoFiles. Each paper folder (named like {arxivId} - {title}) contains structured files: paper.md (full text), paper.bib (citation), kimi.md (AI review), arxiv.id, notes/, and paper.pdf. Use this skill whenever the user asks you to read a paper, summarize a…

X1AOX1A/ZoFiles

Skill Claude CodeCodex

Import arXiv papers into Zotero with duplicate detection and batch support. TRIGGER when: user asks to import papers, add arxiv papers to zotero, batch import papers, check for duplicate papers in zotero, mentions importing by arXiv ID, or wants to list Zotero collections. DO NOT TRIGGER when: user is working on…

cboulanger/zotero-skills

Skill Claude CodeCodex

Reference for Zotero's JavaScript API — items, attachments, relations, sync, HTTP, database, notifier, pane, libraries, and utilities. Use when implementing plugin features that access or manipulate Zotero data, respond to library events, or make network requests. Many of these APIs are undocumented or hard to find.

cboulanger/zotero-skills

Skill Claude CodeCodex

Scaffold, structure, build, and load a Zotero 7+ plugin using zotero-plugin-scaffold. Use when creating a new Zotero plugin, setting up the build toolchain, understanding the plugin lifecycle, or loading a plugin into a running Zotero instance for development.

cboulanger/zotero-skills

Skill Claude CodeCodex

API reference for zotero-plugin-toolkit (v5.x). Covers UITool element creation, KeyboardManager, PromptManager (command palette), DialogHelper, SettingsDialogHelper, ProgressWindowHelper, FilePickerHelper, ClipboardHelper, ReaderTool, ExtraFieldTool, FieldHookManager, PatchHelper, LargePrefHelper…

heidihelena/citevahti

Skill Claude CodeCodex

Benchmark local LLMs (Ollama models such as qwen3:14b, hermes3:8b) as CiteVahti citation prescreening agents on a chosen topic, and build the publication-style prescreen report + a dedicated CiteVahti store from the run. Use this whenever the user wants to test how well small/local models rate claim-vs-source support…

heidihelena/citevahti

Skill Claude CodeCodex

The secure front-door for building, developing, releasing, and updating CiteVahti. Use this whenever you are about to cut a release or bump the version; build, sign, or notarize the desktop app, the .mcpb extension, or the PyInstaller binary; set up or change automatic updates (tufup / code signing); add or change an…

heidihelena/citevahti

Skill Claude CodeCodex

Use when measuring or publishing CiteVahti's own accuracy — running the automatic claim-lexicon evaluation, checking it against its regression baseline, reasoning about how AI second-rater models are rated, or answering "how accurate is CiteVahti?". Follows ADR-0009's three evaluation objects (automatic lexicon eval…