bioinformatics agents

AgentTeam-TaichuAI/ScienceClaw

Agent

Analyze blind comparison results to understand WHY the winner won and generate improvement suggestions.

AgentTeam-TaichuAI/ScienceClaw

Agent

Compare two outputs WITHOUT knowing which skill produced them.

AgentTeam-TaichuAI/ScienceClaw

Agent

Evaluate expectations against an execution transcript and outputs.

TianGzlab/OmicsClaw

Agent

OmicsClaw uses one primary repository context with a Bench-specific supplement.

TianGzlab/OmicsClaw

Agent

Issues and PRDs for this repository live in GitHub Issues for zhou-1314/OmicsClaw. Use the gh CLI for issue operations.

TianGzlab/OmicsClaw

Agent

Engineering skills use five canonical triage roles. Each role maps directly to the corresponding GitHub label.

ammawla/encode-toolkit

Agent

Execute ENCODE ATAC-seq pipeline from FASTQ to accessibility peaks with Tn5 correction, Bowtie2, and MACS2.

ammawla/encode-toolkit

Agent

Execute ENCODE ChIP-seq pipeline from FASTQ to peaks and signal tracks using BWA-MEM, MACS2, and IDR.

ammawla/encode-toolkit

Agent

Execute CUT&RUN pipeline from FASTQ to peaks with Bowtie2, SEACR, and spike-in normalization.

FridrichMethod/awesome-skills

Agent

Writes the full paper draft section by section from the structured outline and Paper Configuration Record.

FridrichMethod/awesome-skills

Agent

Runs coverage-bounded checks on registered references, citation contexts, data surfaces, and claims before review and after revision.

FridrichMethod/awesome-skills

Agent

Orchestrates the full multi-skill academic research pipeline and manages agent handoffs across phases.

fmschulz/omics-skills

Agent

Expert literature discovery and citation metadata agent for peer-reviewed papers, preprints, DOI lookup, and evidence-grounded search triage.

fmschulz/omics-skills

Agent

Expert computational biologist for omics workflows (QC, assembly, annotation, phylogenomics, MAG recovery, viral analysis, and JGI data access).

fmschulz/omics-skills

Agent

Expert scientific writer and editor for publication-quality manuscripts, revision strategy, peer review, and reproducible methods documentation.

45ck/open-genome-agent

Agent Claude Code

Annotation specialist for running deterministic variant annotation and capturing provenance.

45ck/open-genome-agent

Agent Claude Code

Review findings for provenance, caveats, and unsupported leaps before a report is finalized.

45ck/open-genome-agent

Agent Claude Code

Main coordinator for genome-analysis work. Use when a task spans multiple skills, needs sequencing, or needs a final report assembled from evidence.