14,299 tagged Scientific, measured the same way as everything else here.
Browse within: prompt-engineering 31Science 30agents-md 30bioinformatics 25cyanheads 18academic-writing 16ai4science 12arxiv 12hpc 11ai4hpc 10claude-plugin 10hpc-ai 10mcp-tools 10bun 8
Skill Claude CodeCodex
Answer biomedical FACTUAL / recall / multiple-choice questions by querying ToolUniverse database tools instead of answering from memory. Triggers on any 'which gene/drug/variant/disease/pathway/miRNA/TF...' lookup, any question phrased 'according to ' (DisGeNet, OMIM, MSigDB, miRDB, GTRD, MGI, Ensembl, ClinVar…
Skill Claude CodeCodex
Cancer cell-line selection and profiling for experimental model choice. Cross-references DepMap, Cellosaurus, COSMIC, PharmacoDB to deliver identity verification, mutation/CNV profile, gene dependencies, drug sensitivities, and druggable targets. Use to answer 'which cell line should I use for studying gene X?' or 'is…
Skill Claude CodeCodex
Idea-driven experiment design with iterative ablation — method candidate generation (direct / hybrid / cross-idea combination) → benchmark selection → iterative ablation (non-linear: ablation can trigger method simplification and re-planning) → sensitivity analysis → main experiment → optional generalization → deep…
Skill Claude CodeCodex
Generate an academic poster from a drafted paper — distill sections into a single-page HTML poster with figures and inter-section transitions.
Skill Claude CodeCodex
Use when planning, auditing, writing, or revising radiomics, medical imaging AI, and radiology deep learning studies for Radiology/RSNA, Nature-portfolio, Lancet, Cell, npj, European Radiology, or similar venues. Trigger for research frontiers, literature, CT/MRI/PET/ultrasound datasets, ROI/masks/segmentation…
pedrohcgs/claude-code-my-workflow
Agent Claude Code
Journal editor who desk-reviews manuscripts, selects two referees with deliberately different dispositions, calibrates to a target journal from .claude/references/journal-profiles.md, and synthesizes an editorial decision (FATAL / ADDRESSABLE / TASTE). Used by /review-paper --peer [journal].
pedrohcgs/claude-code-my-workflow
Agent Claude Code
Methodology referee for a manuscript. Paper-type-aware (reduced-form / structural / theory+empirics / descriptive / formal-theory / survey-experiment), each with its own dimension weights and mandatory sanity checks. Calibrated to a target journal and primed with a disposition + pet peeves. Used by /review-paper…
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Enforce the replication-protocol.md rule by cross-checking numeric claims in a manuscript against the actual R / Stata / Python outputs. Report PASS/FAIL per claim against tolerance thresholds. Use before submission and before releasing a replication package.
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Snapshot the computational environment for a replication package — detects the analysis stack (R / Stata / Python) and emits the right lockfiles (renv.lock + sessionInfo.txt, requirements.txt / environment.yml / uv.lock, Stata version + ado package list), records seeds and RNG kind, optionally writes a pinning…
pedrohcgs/claude-code-my-workflow
Skill Claude CodeCodex
Root-cause a failing or wrong empirical result with a disciplined reproduce → minimise → hypothesise → instrument → fix loop, instead of guessing-and-poking. Use when the user says "why is my regression wrong", "this number changed", "my script errors out", "the result won't reproduce", "debug this", "this estimate…
Skill Claude CodeCodex
Use whenever you generate or review a chart, plot, table, or paper figure in this workspace, including work delegated by paper-writing, literature-survey, and experiment skills. Applies the Open Science publication style, enforces readable final-size layout for figures and tables, and rejects generic diagram-tool…
PrathamLearnsToCode/paper2code
Skill Claude CodeCodex
Converts an arxiv paper into a minimal, citation-anchored Python implementation. Trigger when user runs /paper2code with an arxiv URL or paper ID, says "implement this paper", or pastes an arxiv link asking for implementation. Flags all ambiguities honestly. Never invents implementation details not stated in the paper.
Skill Claude CodeCodex
NVIDIA-specific TornadoVM workflows on the CUDA backend — profile with Nsight Systems (nsys) and read NVTX ranges, use the hybrid library-task API (cuBLAS/cuBLASLt/cuDNN/cuFFT/cuSPARSE/cuTENSOR/CUTLASS/NCCL native calls from Java), print the generated CUDA-C kernel, and fuzz-test the CUDA-C backend with tornado-fuzz.…
Skill Claude CodeCodex
Applies the scientific method to debugging by helping users form specific, testable hypotheses, design targeted experiments, and systematically confirm or reject theories to find root causes. Use when a user says their code isn't working, they're getting an error, something broke, they want to troubleshoot a bug, or…
Skill Claude CodeCodex
Drive structured autoresearch iteration after evo:discover and the baseline commit. Use when the user invokes /evo:optimize or asks to try ideas, try variants, run experiments, use available GPUs, improve the current best/frontier, continue an evo search, or compare candidate changes in an evo workspace. The…
icebird1998/drawio-scientific-illustrator
Skill Claude CodeCodex
Recreate, trace, revise, inspect, or export static scientific figures and schematic illustrations live inside the visible draw.io desktop canvas through draw.io's own graph API. Use when the user wants to watch an MCP draw a reference figure step by step in draw.io, explicitly rejects XML-first generation or…
Skill Claude CodeCodex
Run existing ShinkaEvolve tasks with the shinkarun CLI from a task directory (evaluate.py + initial. ). Use when an agent needs to launch async evolution runs quickly with required --resultsdir, generation count, and strict namespaced keyword overrides.
Command Claude Code
You are the Ideation Agent for NanoResearch. Your job is to search academic literature and generate novel research hypotheses.
Command Claude Code
You are the Planning Agent for NanoResearch. Your job is to design a detailed experiment blueprint from the ideation output.
Command Claude Code
You are the NanoResearch pipeline orchestrator. Run the complete research pipeline from topic to paper.
Skill Claude CodeCodex
Generates publication-quality figures for ML papers from research context. Given a paper section or description, extracts system components and relationships to generate architecture diagrams via Gemini. Given experiment results or data, auto-selects chart type and generates data-driven figures via matplotlib/seaborn.…
Skill Claude CodeCodex
Write publication-ready ML/AI/Systems papers for NeurIPS, ICML, ICLR, ACL, AAAI, COLM, OSDI, NSDI, ASPLOS, SOSP. Use when drafting papers from research repos, structuring arguments, verifying citations, or preparing camera-ready submissions. Includes LaTeX templates, reviewer guidelines, and citation verification…
Skill Claude CodeCodex
Discover daily arXiv papers for LLM/Agent topics, rank candidates with keyword and institution filters, and prepare a small selected paper list for llm-paper-daily style workflows.
Xiangyue-Zhang/auto-deep-researcher-24x7
Agent
Central decision-maker that plans experiments and reflects on results.
At most 3 mods per repository are shown here — the rest are on their repository pages: