532 projects whose own agent configuration covers scientific. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,450Claude Code6,586Data and AI3,698Backend and APIs3,488Languages3,402Planning3,191Git and workflow3,129Code review2,728Memory and context2,353Testing2,330DevOps and cloud2,293Research2,288
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorWindsurfKiro
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| SourceShift/osf-mcp-server An MCP (Model Context Protocol) server for interacting with the [Open Science Framework (O | 1 | Claude Code | 1 | 892 tok |
| dna-seq/just-prs-mcp Just-PRS MCP server | 1 | Claude Code, Codex, OpenCode | 4 | 3,963 tok |
| Proprius-Labs/pocketscout-mcp An MCP server that aggregates structural, chemical, and literature data from UniProt, PDB, | 1 | Claude Code | 1 | 1,775 tok |
| Bonifatius94/myscrape Go port of myscrape — web-research MCP server (web_search/web_fetch/web_research) as a com | 1 | Claude Code | 3 | — |
| loumalouomega/Kratos-MCP-Server loumalouomega.github.io MCP server for Kratos Multiphysics | 1 | Claude Code | 1 | 4,237 tok |
| learningtour/chat-with-audio Chat with Audio — chat-driven audio enhancement (MCP + C++ DSP + A/B viewer). Part of Agen | 1 | Claude Code | 1 | 1,635 tok |
| fbereilh/cellar AI-agent-first interactive notebook environment (Jupyter-compatible, SvelteKit, MCP agent | 1 | Claude Code | 2 | 3 tok |
| prashant-cr/Clinic-front-desk-MCP-server AI receptionist for a small medical clinic, as an MCP server: appointment booking, resched | 1 | Claude Code | 1 | 2,018 tok |
| hadidwirsty/intervals-icu-mcp | 1 | Claude Code, Codex | 2 | — |
| JulieElkinsAWS/psychometrics-mcp Classical test theory, differential item functioning, local item dependence and standard s | 1 | Claude Code | 1 | 6,023 tok |
| cyanheads/uniprot-mcp-server npmjs.com Search UniProtKB by protein function, fetch curated records, map IDs across databases, and | 1 | Claude Code, Codex, OpenCode | 2 | 13,062 tok |
| cyanheads/noaa-spaceweather-mcp-server npmjs.com Query NOAA SWPC space weather: geomagnetic storm scales, Kp index, aurora forecasts, solar | 1 | Claude Code, Codex, OpenCode | 2 | 10,296 tok |
| cyanheads/imf-mcp-server npmjs.com Query IMF SDMX 3.0 macroeconomic data — 193 dataflows, 190 countries, WEO projections, BOP | 1 | Claude Code, Codex, OpenCode | 2 | 13,090 tok |
| zamushwani/biomedical-ai-skills AI agent skills for cancer biology and multi-omics research | 1 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 3,531 tok |
| aliildan/cochrane-mcp MCP server for searching the Cochrane Library and fetching review/trial details. | 1 | Claude Code | 1 | 2,384 tok |
| ZiChenWang114514/cdxml-toolkit-community Community CDXML toolkit and MCP server. | 1 | Claude Code, Codex, OpenCode | 2 | 4,108 tok |
| 263311487-ux/falsify 263311487-ux.github.io The scientific thinking protocol for AI agents — falsify before you believe. 5-stage falsi | 1 | Claude Code, Codex, Cursor, OpenCode | 3 | 280 tok |
| awheeler262/qgis_mcp This project explores ways to interact with QGIS using the QGIS MCP Plugin and an MCP Serv | 0 | Claude Code | 1 | 1,635 tok |
| sandraschi/leanforge-mcp Lean theorem prover MCP: automated proof search, mathlib integration, job management | 0 | Claude Code, Codex, OpenCode | 2 | 1,889 tok |
| Black-Swan-Causal-Labs/target-mcp | 0 | Claude Code | 1 | — |
| Bigred97/apra-mcp pypi.org Query the Australian Prudential Regulation Authority in plain English from Claude or any M | 0 | Claude Code | 4 | 446 tok |
| aliveranme/stata-mcp | 0 | Claude Code | 3 | 24,127 tok |
| huangzesen/xhelio-spice | 0 | Claude Code | 1 | 2,561 tok |
| lonexreb/cite-guard pypi.org The free, open watchdog for retracted & problematic citations — Retraction Watch + OpenAle | 0 | Claude Code | 1 | 1,260 tok |
| lostnumber07/shearline Analyst-grade US severe-weather tools for AI agents over MCP: NWS warnings with IBW tags, | 0 | Claude Code | 3 | — |
| m2ai-mcp-servers/chartinghero MCP server for clinical charting with Claude — AI-powered visit documentation for home hea | 0 | Claude Code | 1 | 767 tok |
| mcpwright/soi-mcp MCP server for IRS Statistics of Income (SOI) data by ZIP — income, AGI distribution, tax, | 0 | Claude Code | 3 | 1,362 tok |
| rongchang726-png/vivarium A small world that evolves on its own (neural creatures under natural selection) — plus a | 0 | Claude Code | 1 | 2,205 tok |
| cholhwanjung/research-mcp Claude Desktop research mcp server | 0 | Claude Code | 8 | — |
| zhangreling02-ai/3dslicer-claude-bridge MCP server bridging 3D Slicer with Claude Code for medical image analysis | 0 | Claude Code | 14 | 2,053 tok |
| Tom-R-Main/medgemma-mcp Deprecated — unmaintained MedGemma MCP research prototype; do not use clinically. | 0 | Claude Code | 1 | 629 tok |
| jsynowiec/mcp-server-airly An MCP server that integrates the Airly API, enabling natural language interaction with ai | 0 | Claude Code, Codex, OpenCode | 2 | 318 tok |
| Friedemann12/paper-mcp | 0 | Claude Code | 2 | — |
| numa08/noaa-space-weather-mcp NOAA space weather data MCP server for amateur radio operators — HF propagation analysis t | 0 | Claude Code | 1 | 1,259 tok |
| shuji-bonji/epsg-mcp npmjs.com An MCP server that provides knowledge about Coordinate Reference Systems (CRS). | 0 | Claude Code | 1 | 584 tok |
| anshika1109/calculator-mcp-server Calculator with Java GUI and MCP server with authentication | 0 | Claude Code, Kiro | 1 | — |
| MacromNex/esmfold_mcp ESMFold MCP server for protein structure prediction | 0 | Claude Code | 1 | 805 tok |
| MacromNex/spired_stab_mcp SPIRED-Stab MCP server for protein stability prediction | 0 | Claude Code | 1 | 856 tok |
| PrisonBreakPB/control-science-literature-mcp A read-only MCP server for Control Science and Engineering literature search. | 0 | Claude Code, Codex | 1 | — |
| red-cars-io/clinical-trials-mcp | 0 | Claude Code, Codex, OpenCode | 2 | 5,985 tok |
| u9401066/rootcause-mcp Clinical Root Cause Analysis MCP Server - AI-guided structured RCA with Fishbone (6M), 5-W | 0 | Claude Code, Codex, GitHub Copilot, OpenCode | 51 | 4,716 tok |
| nickzren/mygene-mcp MCP server for MyGene.info API | 0 | Claude Code, Codex, OpenCode | 2 | 590 tok |
| flyearth9981/matlab-mcp-server Matlab MCP Server in python | 0 | Claude Code | 1 | — |
| iflow-mcp/subspace-lab-matlab-mcp-server Matlab MCP Server in python | 0 | Claude Code | 1 | — |
| u9401066/academic-figures-mcp Academic figure generation MCP server for AI agents — turn papers into publication-ready m | 0 | Claude Code, Codex, GitHub Copilot, OpenCode | 43 | 2,813 tok |
| AiAgentKarl/space-mcp-server MCP server for NASA space data — Astronomy, Mars Rovers, Asteroids, Earth imagery, Exoplan | 0 | Claude Code | 1 | 312 tok |
| Yaeshio/FreeCAD-MCP-For-YDGA | 0 | Claude Code | 3 | — |
| KrishnaKakani-GitHub/clinical-ai-governance-platform | 0 | Claude Code | 1 | 982 tok |
| surajinacademia/cellpose_mcp MCP tools for Cellpose and napari integration | 0 | Claude Code | 1 | 678 tok |
| fc0web/lab-notebook-mcp Experimental notes MCP server — a shared primary-source layer connecting benchtop (measure | 0 | Claude Code | 1 | 808 tok |