59 projects whose own agent configuration covers scientific. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,412Data and AI4,299Backend and APIs3,694Languages3,682Planning3,492Git and workflow3,285Code review2,942Memory and context2,581Research2,499Writing and docs2,458Testing2,454Frontend2,420
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorKiroWindsurf
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| HarleyCoops/Math-To-Manim Create Epic Math and Physics Animations & Study Notes From Text and Images. | 2,565 | Claude Code, Codex, GitHub Copilot, OpenCode | 6 | 12,381 tok |
| EliasOenal/multimon-ng | 1,135 | GitHub Copilot | 5 | 3,936 tok |
| ZimoLiao/scholaraio zimoliao.github.io Scholar All-In-One: A research infrastructure for AI agents | 569 | Claude Code, Codex, GitHub Copilot, Cursor, OpenCode | 51 | 2,598 tok |
| fizzbee-io/fizzbee fizzbee.io Easiest-ever formal methods language! Designed for developers crafting distributed systems | 347 | Claude Code, GitHub Copilot | 7 | 5,657 tok |
| Noi1r/beamer-skill A Claude Code skill for creating, compiling, reviewing, and polishing academic Beamer LaTe | 343 | GitHub Copilot | 1 | 1,448 tok |
| ucam-eo/geotessera Python library for the Tessera embeddings | 342 | GitHub Copilot | 1 | 2,084 tok |
| microsoft/P.808 This is an open-source implementation of the ITU P.808 standard for "Subjective evaluation | 230 | Claude Code, Codex, GitHub Copilot, OpenCode | 6 | 1,712 tok |
| SkBlaz/py3plex skblaz.github.io Py3plex - A multilayer complex network visualization and analysis library in python3 | 189 | GitHub Copilot | 1 | 2,573 tok |
| equinor/neqsim equinor.github.io NeqSim is a library for calculation of fluid behavior, phase equilibrium and process simul | 150 | Claude Code, Codex, GitHub Copilot, Cursor, OpenCode, Windsurf | 6 | 34,717 tok |
| CliMA/ClimaAtmos.jl clima.github.io GPU-capable global atmosphere model of the CliMA Earth System Model, designed for calibrat | 126 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 905 tok |
| olibartfast/neuriplo-infer C++ app for computer vision inference, supporting multiple tasks and backends. | 103 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 2,281 tok |
| jmrplens/TFG-TFM_EPS jmrp.io Plantilla LaTeX para la elaboración de TFG y TFM en la Escuela Politécnica Superior de la | 84 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 11,314 tok |
| mituan-ai/PaperBanana-CN Scientific figure workbench with independent VLM/image connections, Chinese UI, and unifie | 78 | Claude Code, GitHub Copilot | 4 | 445 tok |
| monarch-initiative/dismech dismech.monarchinitiative.org Disease Mechanisms KB | 57 | Claude Code, Codex, GitHub Copilot, OpenCode | 29 | 39,339 tok |
| armpro24-blip/cad-cae-copilot CAD/CAE Copilot — an AI-native CAD/CAE/CAX workbench for AI agents. Text-to-CAD, text-to-C | 56 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 36,119 tok |
| fuwenhao12/academic-ref-inserter | 55 | Claude Code, Codex, GitHub Copilot, Cursor, Gemini CLI, OpenCode | 6 | 3,753 tok |
| openmodelingfoundation/openmodelingfoundation.github.io openmodelingfoundation.org Website for standards and governance of the Open Modeling Foundation | 53 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 692 tok |
| Patrick-Healy/tikz-diagrams-skill | 39 | Claude Code, Codex, GitHub Copilot, Gemini CLI, OpenCode | 5 | 589 tok |
| TheDigitalNinja/mcp-fitbit thedigital.ninja Give your AI assistant access to your Fitbit data for personalized health insights, trend | 33 | Claude Code, GitHub Copilot | 2 | 2,104 tok |
| u9401066/pubmed-search-mcp u9401066.github.io MCP SDK v2 server for PubMed and multi-source biomedical research, with resilient search, | 27 | Claude Code, Codex, GitHub Copilot, OpenCode | 45 | 8,398 tok |
| ai4curation/ai-gene-review ai4curation.github.io Demonstration of AI review of existing functional annotations | 24 | Claude Code, Codex, GitHub Copilot, OpenCode | 22 | 6,891 tok |
| Intersect-Collaborations-LLC/research-workflow-assistant Open-source AI research assistant for VS Code + GitHub Copilot. Connects to PubMed, OpenAl | 24 | Claude Code, GitHub Copilot | 13 | 7,170 tok |
| rippleshe/sciplot-academic Chinese scientific research plotting library | Nature/IEEE styles | pastel/earth/ocean col | 23 | Claude Code, GitHub Copilot | 2 | 2,979 tok |
| hdl-tools/analog-chip-design-agents Analog HDL Design Full-stack Agents | 22 | GitHub Copilot | 1 | 237 tok |
| machinavitalis/jaxonomy py.jaxonomy.com JAX-native simulation engine for hybrid dynamical systems — block-diagram modeling, ODE/DA | 19 | Claude Code, Codex, GitHub Copilot, Gemini CLI, OpenCode | 5 | 2,254 tok |
| Hereon-InstituteMS/OASiS OASiS — an open-source agentic framework for verified multi-physics, multi-code simulation | 18 | GitHub Copilot, Cursor | 2 | 1,572 tok |
| omar-A-hassan/medsci-agent Biomedical research agent with 28 MCP tools powered by MedGemma, TxGemma and OpenCode | 18 | Claude Code, GitHub Copilot, OpenCode | 31 | 907 tok |
| HolobiomicsLab/asb-skill-collections holobiomicslab.cnrs.fr Curated, evidence-grounded skill and software-tool collections for scientific AI agents, g | 15 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 2,554 tok |
| BnJam/stac-mcp An MCP Server for STAC requests | 13 | Codex, GitHub Copilot, OpenCode | 2 | 5,711 tok |
| u9401066/med-paper-assistant u9401066.github.io Auditable MCP + cross-agent harness for autonomous and human-guided academic writing—from | 12 | Claude Code, Codex, GitHub Copilot, OpenCode | 50 | 8,475 tok |
| LBurny/symkit-mcp It is an MCP server that lets AI agents perform step-by-step symbolic derivations: calcula | 10 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 3,013 tok |
| briangmilnes/APAS-VERUS Proving 'Algorithms Parallel and Sequential' in Rust (APAS-AI) using Verus. | 10 | Claude Code, GitHub Copilot | 2 | 50,605 tok |
| zfy465914233/scholar-agent Knowledge agent for LLMs — online research + local accumulation, gets smarter over time. M | 9 | GitHub Copilot | 1 | 528 tok |
| eco-emma/emma_envdata Environmental data processing for www.emma.eco | 9 | Claude Code, GitHub Copilot | 16 | 826 tok |
| Aledon8/OpenLeukemia openleukemia.com OpenLeukemia is a patient-centered platform for organizing leukemia-related medical data, | 9 | Claude Code, Codex, GitHub Copilot, OpenCode | 9 | 2,788 tok |
| aryaminus/astro astro-api-a2rc.onrender.com Astrology MCP server & Agent Skill — birth charts, transits, synastry across Western, Vedi | 8 | Claude Code, Codex, GitHub Copilot, Cursor, OpenCode | 4 | 1,589 tok |
| Sounio-lang/sounio sounio.vercel.app Self-hosted systems + scientific programming language with epistemic types, uncertainty pr | 6 | Claude Code, Codex, GitHub Copilot, Cursor, OpenCode | 12 | 15,060 tok |
| Steffen025/pag-extract Kongressprogramme als Datei statt 40 Browser-Tabs — liest das öffentliche Programm jedes m | 5 | Claude Code, Codex, GitHub Copilot, OpenCode | 4 | 1,767 tok |
| boettiger-lab/data-workflows Dataset processing workflows for cloud-native geospatial data on NRP Kubernetes | 5 | Claude Code, Codex, GitHub Copilot, OpenCode | 12 | 9,216 tok |
| u9401066/medical-calc-mcp 🏥 MCP Server with 121 validated medical calculators for AI agents. DDD architecture, evid | 4 | GitHub Copilot | 1 | 1,770 tok |
| u9401066/nsforge-mcp Neurosymbolic Forge — an MCP server that turns concepts into verifiable, traceable formula | 4 | Claude Code, Codex, GitHub Copilot, OpenCode | 23 | 5,925 tok |
| Rebell-Leader/SpatialAI_MCP Empowering spatial transcriptomics research by providing AI agents with a standardized int | 4 | Claude Code, Codex, GitHub Copilot, Gemini CLI, OpenCode | 8 | 9,039 tok |
| agtm1199/uber-polya agtm1199.github.io A universal problem-solving skill for code agents (e.g. Claude, Codex), inspired by George | 4 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 3,214 tok |
| Cadasto/openehr-assistant-plugin cadasto.github.io openEHR assistant AI plugin suite with Skills, commands, and MCP server configuration for | 4 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 6,386 tok |
| StepFunctionLLC/mcp-server-cantera An MCP server wrapped around Cantera to facilitate use by an LLM | 4 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 2,463 tok |
| panoptes/panoptes-utils panoptes.github.io A set of Astronomical utility functions. PANOPTES style. :hammer_and_wrench: :telescope: : | 4 | Codex, GitHub Copilot, Gemini CLI, OpenCode | 3 | 8,008 tok |
| tkpratardan/lemma AI harness for DS/ML workflows. | 3 | Codex, GitHub Copilot, OpenCode | 2 | 558 tok |
| Hongda-Zhao/bio-gene-to-reference-tree Auditable agent skill for resolving protein queries, selecting references, and planning re | 3 | GitHub Copilot | 1 | 105 tok |
| YixuanYang00/math-beamer-slides-skill A skill for creating, compiling, reviewing, and polishing rigorous mathematical Beamer/LaT | 3 | GitHub Copilot | 2 | 2,139 tok |
| u9401066/pharmacy-mcp Pharmacy MCP Server - Drug information, dosage calculators, and interaction checkers via M | 3 | Claude Code, Codex, GitHub Copilot, OpenCode | 43 | 2,916 tok |