37 projects whose own agent configuration covers scientific. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,412Data and AI4,299Backend and APIs3,694Languages3,682Planning3,492Git and workflow3,285Code review2,942Memory and context2,581Research2,499Writing and docs2,458Testing2,454Frontend2,420
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorKiroWindsurf
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| K-Dense-AI/science-superpowers k-dense.ai Composable computational-science methodology skills for AI research agents — pre-registrat | 318 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 688 tok |
| NVIDIA/cosmos-curator Cosmos Curator is a powerful video curation system that processes, analyzes, and organizes | 264 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 1,442 tok |
| dualverse-ai/station dualverse.ai The Station is an open-world multi-agent environment where AI agents pursue autonomous sci | 185 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 7,604 tok |
| ArcInstitute/SRAgent LLM agents for working with the SRA and associated bioinformatics databases. | 181 | Codex, Gemini CLI, OpenCode | 2 | 631 tok |
| yusong652/itasca-mcp pypi.org MCP server connecting AI agents to ITASCA engines (PFC, FLAC, 3DEC, MPoint, MassFlow) — ru | 173 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 4,770 tok |
| learningmatter-mit/AtomisticSkills arxiv.org Intergrating Atomistic Skills into Agentic IDEs (Cursor, Claude Code, Google Antigravity, | 161 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 1,946 tok |
| evo-design/proto-tools proto.evodesign.org A universal infrastructure layer for generative biology | 125 | Claude Code, Codex, Gemini CLI, OpenCode | 5 | 1,593 tok |
| wybert/earth-agent-chrome-ext Earth Agent is a Cursor-like AI agent for Google Earth Engine. It can be used right in you | 104 | Claude Code, Gemini CLI | 2 | 965 tok |
| fuwenhao12/academic-ref-inserter | 55 | Claude Code, Codex, GitHub Copilot, Cursor, Gemini CLI, OpenCode | 6 | 3,753 tok |
| vlasenkoalexey/tpu_performance_autoresearch_wiki vlasenkoalexey.github.io Wiki built using Karpathy method containing information about TPU performance optimization | 54 | Claude Code, Codex, Gemini CLI, OpenCode | 21 | 1,427 tok |
| yusong652/flac-mcp pypi.org MCP server connecting AI agents to ITASCA FLAC — run continuum simulations through natural | 39 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 3,549 tok |
| Patrick-Healy/tikz-diagrams-skill | 39 | Claude Code, Codex, GitHub Copilot, Gemini CLI, OpenCode | 5 | 589 tok |
| friendsofstrandseq/mosaicatcher-pipeline friendsofstrandseq.github.io Integrated workflow for SV calling from single-cell Strand-seq data | 26 | Claude Code, Gemini CLI | 3 | 4,892 tok |
| MaxGhi8/HyperNOs | 25 | Gemini CLI | 1 | 830 tok |
| ppak10/RocketSmith arxiv.org Use agents to design and build high powered rockets | 21 | Gemini CLI | 1 | 85 tok |
| MattArtzAnthro/gephi-ai mattartz.me Extends Gephi with AI capabilities. Includes a Gephi plugin for graph analytics, an MCP se | 21 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 2,678 tok |
| machinavitalis/jaxonomy py.jaxonomy.com JAX-native simulation engine for hybrid dynamical systems — block-diagram modeling, ODE/DA | 19 | Claude Code, Codex, GitHub Copilot, Gemini CLI, OpenCode | 5 | 2,254 tok |
| cybertronai/SutroYaro cybertronai.github.io SutroYaro — Sutro Group research workspace for energy-efficient AI training. Point any cod | 16 | Claude Code, Codex, Gemini CLI, OpenCode | 14 | 7,023 tok |
| bigbio/sdrf-skills sdrf.quantms.org Agentic plugins to annotate SDRF using Claude; Codex; Cursor; Gemini | 16 | Claude Code, Gemini CLI | 2 | 6,449 tok |
| jimezsa/opencolab opencolab.ai 🐙 Accelerating Scientific Discovery — Turn your research into an always-on autonomous lab | 11 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 5,041 tok |
| kucherenko/petropowers AI skills framework for petroleum engineering workflows, built on Superpowers foundation. | 11 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 1,347 tok |
| rlacombe/switchback-running switchback.run Ultrarunning training companion agent powered by Intervals.icu. | 10 | Claude Code, Codex, Gemini CLI, OpenCode | 16 | 14,404 tok |
| TaoELi/MaxwellLink maxwelllink.org A flexible framework for self-consistent EM-molecular simulations, powered by AI agent ski | 10 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 755 tok |
| pengzhangzhi/superpowers-ml Skills that make your AI agent do ML research like a skeptical scientist, not a hype machi | 8 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 1,913 tok |
| malekokour/clinpharm-pmx-skills malekokour.github.io Turn any AI agent into a clinical pharmacologist and pharmacometrician. It reviews, reconc | 6 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 1,501 tok |
| PancrePal-xiaoyibao/VitaForge VitaForge | Life Workshop — an AI4S dry-lab engine focused on general medicine and the bro | 6 | Claude Code, Codex, Gemini CLI, OpenCode | 56 | 3,171 tok |
| brainets/braina Brain Interaction Analysis | 5 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 3,362 tok |
| Rebell-Leader/SpatialAI_MCP Empowering spatial transcriptomics research by providing AI agents with a standardized int | 4 | Claude Code, Codex, GitHub Copilot, Gemini CLI, OpenCode | 8 | 9,039 tok |
| panoptes/panoptes-utils panoptes.github.io A set of Astronomical utility functions. PANOPTES style. :hammer_and_wrench: :telescope: : | 4 | Codex, GitHub Copilot, Gemini CLI, OpenCode | 3 | 8,008 tok |
| jeonnoin-alt/Eureka Scientific TDD for AI coding agents: pre-registration before data, claims audit before sub | 2 | Gemini CLI | 1 | 27 tok |
| shihabshahrier/manim-coding-skill AI STEM animation skill — ManimGL for coding agents | 2 | Claude Code, Codex, GitHub Copilot, Gemini CLI, OpenCode | 4 | 1,024 tok |
| Stephen-studying/tech-route-maker Evidence-grounded editable technical route diagrams for research and engineering projects. | 2 | Claude Code, Codex, GitHub Copilot, Gemini CLI, OpenCode | 4 | 1,476 tok |
| Eklavya-San/CTQ-extraction eklavya-san.github.io AI agent skill for extracting Critical-To-Quality (CTQ) parameters, GD&T feature control f | 2 | Claude Code, Cursor, Gemini CLI | 3 | 231 tok |
| asokore/statcite statcite.com Official economic statistics for AI agents — every number with a full citation, plus verif | 1 | Claude Code, Gemini CLI | 2 | 2,618 tok |
| mdfranz/saruca Mining Gemini CLI | 1 | Codex, Gemini CLI, OpenCode | 2 | 2,542 tok |
| luc-me/ltspiceMCP Un servidor MCP (Model Context Protocol) que permite a los LLMs diseñar y simular circuito | 1 | Gemini CLI | 1 | 981 tok |
| zamushwani/biomedical-ai-skills AI agent skills for cancer biology and multi-omics research | 1 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 3,531 tok |