342 projects whose own agent configuration covers scientific. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,412Data and AI4,299Backend and APIs3,694Languages3,682Planning3,492Git and workflow3,285Code review2,942Memory and context2,581Research2,499Writing and docs2,458Testing2,454Frontend2,420
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorKiroWindsurf
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| K-Dense-AI/scientific-agent-skills arxiv.org Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 1 | 43,017 | Claude Code, Codex, OpenCode | 2 | 4,354 tok |
| NVIDIA/TensorRT-LLM nvidia.github.io TensorRT LLM provides users with an easy-to-use Python API to define Large Language Models | 14,556 | Claude Code, Codex, OpenCode | 42 | 2,974 tok |
| ResearAI/DeepScientist Now, Stronger AI Pushes Frontiers, Stronger Our Shared Future. | 3,315 | Claude Code, Codex, OpenCode | 2 | 6,140 tok |
| projectchrono/chrono projectchrono.org High-performance C++ library for multiphysics and multibody dynamics simulations | 3,014 | Codex, OpenCode | 1 | 2,012 tok |
| wasserth/TotalSegmentator Tool for robust segmentation of >100 important anatomical structures in CT and MR images | 2,971 | Codex, OpenCode | 1 | 1,221 tok |
| huangwb8/ChineseResearchLaTeX 中国科研常用LaTeX模板集 | 2,700 | Claude Code, Codex, OpenCode | 2 | 11,923 tok |
| HarleyCoops/Math-To-Manim Create Epic Math and Physics Animations & Study Notes From Text and Images. | 2,565 | Claude Code, Codex, GitHub Copilot, OpenCode | 6 | 12,381 tok |
| K-Dense-AI/claude-scientific-writer k-dense.ai A general purpose scientific writer | 2,305 | Claude Code, Codex, OpenCode | 28 | 10,828 tok |
| NVIDIA-NeMo/Gym docs.nvidia.com Evaluate and improve models and agents using environments | 1,168 | Claude Code, Codex, OpenCode | 9 | 2,292 tok |
| ClawBio/ClawBio clawbio.github.io 🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproduc | 1,126 | Claude Code, Codex, OpenCode | 2 | 15,180 tok |
| xuzhougeng/wisp-science wispscience.com Open-source, local-first desktop AI research workbench for scientific computing with Pytho | 1,098 | Codex, OpenCode | 1 | 2,264 tok |
| Tencent-Hunyuan/UniRL unirl-project.github.io UniRL is a Framework for Unified Multimodal Model Reinforcement Learning | 932 | Claude Code, Codex, OpenCode | 4 | 1,425 tok |
| stencila/stencila stencila.io Documents with Scientific Intelligence | 903 | Codex, OpenCode | 1 | 1,388 tok |
| PINA-org/PINA pina-org.github.io Physics-Informed Neural networks for Advanced modeling | 790 | Claude Code, Codex, OpenCode | 13 | 832 tok |
| zhnnky329/MathModeling-skills 面向数学建模竞赛的 Claude Code / Codex Skills ，支持分阶段建模流程与 Python、MATLAB/北太天元代码分支。 | 731 | Claude Code, Codex, OpenCode | 32 | 3,168 tok |
| faridrashidi/cnsplots cnsplots.farid.one 🎨 Toolkit for generating publication-quality plots for Cell, Nature and Science journals | 663 | Claude Code, Codex, OpenCode | 2 | 1,381 tok |
| genomoncology/biomcp biomcp.org BioMCP: Biomedical Model Context Protocol | 625 | Codex, OpenCode | 1 | 757 tok |
| etal/cnvkit cnvkit.readthedocs.org Copy number variant detection from targeted DNA sequencing | 616 | Claude Code, Codex, OpenCode | 2 | 2,478 tok |
| ZimoLiao/scholaraio zimoliao.github.io Scholar All-In-One: A research infrastructure for AI agents | 569 | Claude Code, Codex, GitHub Copilot, Cursor, OpenCode | 51 | 2,598 tok |
| harbor-framework/terminal-bench-science terminal-bench-science.ai Terminal-Bench-Science: Evaluating AI agents on research workflows across scientific domai | 530 | Claude Code, Codex, OpenCode | 5 | 12,602 tok |
| lllllllama/RigorPilot-Skills | 484 | Claude Code, Codex, OpenCode | 5 | 799 tok |
| exon-research/genomi genomiagent.com Local-first, open-source Claude Science alternative, before Claude Science is a thing. Tur | 481 | Claude Code, Codex, OpenCode | 2 | 5,828 tok |
| appautomaton/latex-arxiv-SKILL appautomaton.renocrypt.com A highly customizable agentic harness for arXiv-ready ML/AI review papers (and beyond). It | 423 | Codex, OpenCode | 5 | 472 tok |
| LimHyungTae/awesome-claudecode-paper-proofreading Claude Code-driven research paper proofreading prompt | 418 | Codex, OpenCode | 1 | 1,274 tok |
| MinghuiChen43/awesome-deep-phenomena A curated list of papers of interesting empirical study and insight on deep learning. Cont | 409 | Codex, OpenCode | 1 | 1,891 tok |
| frenzymath/Danus Orchestrating Mathematical Reasoning Agents with Fact-Graph Memory | 403 | Claude Code, Codex, OpenCode | 5 | 2,595 tok |
| PKU-YuanGroup/OpenAI4S openai4s.org 9.9 元豆包 API 复刻 Claude Science | 387 | Claude Code, Codex, OpenCode | 2 | 7,507 tok |
| NVIDIA/cuda-q-academic This repo contains CUDA-Q Academic materials, including self-paced Jupyter notebook module | 379 | Codex, OpenCode | 1 | 3,183 tok |
| flexcompute/tidy3d docs.flexcompute.com fast, large scale photonic simulation platform | 362 | Claude Code, Codex, OpenCode | 2 | 1,612 tok |
| jaechang-hits/SciAgent-Skills omicshorizon.ai 197 bioinformatics & life science skills for Claude Code and AI agents — BixBench 92.0% ac | 361 | Claude Code, Codex, OpenCode | 2 | 6,404 tok |
| topocm/topocm_content topocondmat.org Course on topology in condensed matter | 334 | Codex, OpenCode | 1 | 174 tok |
| K-Dense-AI/science-superpowers k-dense.ai Composable computational-science methodology skills for AI research agents — pre-registrat | 318 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 688 tok |
| csml-rpi/Foam-Agent arxiv.org Foam-Agent: An end-to-end, composable multi-agent framework for automating CFD simulations | 314 | Codex, OpenCode | 1 | 1,630 tok |
| utilForever/CubbyFlow cubbyflow.github.io Voxel-based fluid simulation engine for computer games | 300 | Codex, OpenCode | 1 | 4,114 tok |
| AtomFlow-AI/MoleCode arxiv.org Molecode presents molecules as code and enables LLMs to operate and reason on chemistry di | 299 | Claude Code, Codex, OpenCode | 2 | 847 tok |
| apache/texera texera.apache.org Human-AI Collaborative Data Science Using Visual Workflows | 299 | Claude Code, Codex, OpenCode | 2 | 3,388 tok |
| JuliaFEM/JuliaFEM.jl juliafem.github.io The JuliaFEM software library is a framework that allows for the distributed processing of | 275 | Codex, OpenCode | 1 | 4,258 tok |
| NVIDIA/cosmos-curator Cosmos Curator is a powerful video curation system that processes, analyzes, and organizes | 264 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 1,442 tok |
| yazinsai/tilawa tilawa.dev Offline Quran verse recognition — identify surah and ayah from audio. (Formerly offline-ta | 263 | Codex, OpenCode | 1 | 1,281 tok |
| helixnow/deep-student deepstudent.cn An open-source, local-first AI learning workbench | 261 | Claude Code, Codex | 2 | — |
| yunshenwuchuxun/latex-paper-skills A modular skill-based framework for writing, revising, and managing LaTeX academic papers | 256 | Codex | 8 | — |
| handsomeZR-netizen/mathmodel-skill 三竞赛 (CUMCM/MCM/电工杯) 数学建模 skill — harness-agnostic, 同时支持 Claude Code 与 Codex CLI, 全程问答式 (Fr | 252 | Codex, OpenCode | 1 | 604 tok |
| xucao-42/bilateral_normal_integration Official implementation of "Bilateral Normal Integration" (BiNI), ECCV 2022. | 245 | Claude Code, Codex, OpenCode | 2 | 1,838 tok |
| ProjectDXAI/labrat dxrg.ai Autonomous multi-branch research lab. Branches compete for compute budget. The system conv | 239 | Claude Code, Codex, OpenCode | 3 | 1,280 tok |
| maxwell2732/codex-stata-for-economists A Codex Stata pipeline for Economists by 朱晨 | 遗传社科研究 | 238 | Claude Code, Codex, OpenCode | 33 | 5,263 tok |
| isbeorn/nina nighttime-imaging.eu N.I.N.A. (Nighttime Imaging 'N' Astronomy) - Advanced astrophotography sequencing software | 232 | Claude Code, Codex, OpenCode | 3 | 2,705 tok |
| microsoft/P.808 This is an open-source implementation of the ITU P.808 standard for "Subjective evaluation | 230 | Claude Code, Codex, GitHub Copilot, OpenCode | 6 | 1,712 tok |
| RealSeaberry/AutoMCM-Pro 全栈式自动数学建模竞赛Skill，支持 Claude Code / Codex / opencode / DeepSeek Harness。AI 担任 Autopilot，人类担任 | 221 | Claude Code, Codex | 4 | — |
| CamusGIT/EvoQuant EvoQuant is a self-evolving AI research agent specialized in quantitative investment resea | 212 | Codex, OpenCode | 1 | 572 tok |
| VerisimilitudeX/DNAnalyzer Precision genomics for everyone, everywhere. Powered by private AI. | 186 | Codex, OpenCode | 1 | 1,306 tok |