544 projects whose own agent configuration covers scientific. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,412Data and AI4,299Backend and APIs3,694Languages3,682Planning3,492Git and workflow3,285Code review2,942Memory and context2,581Research2,499Writing and docs2,458Testing2,454Frontend2,420
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorKiroWindsurf
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| karpathy/nanochat The best ChatGPT that $100 can buy. | 57,808 | Claude Code | 1 | — |
| K-Dense-AI/scientific-agent-skills arxiv.org Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 1 | 43,017 | Claude Code, Codex, OpenCode | 2 | 4,354 tok |
| NVIDIA/TensorRT-LLM nvidia.github.io TensorRT LLM provides users with an easy-to-use Python API to define Large Language Models | 14,556 | Claude Code, Codex, OpenCode | 42 | 2,974 tok |
| aiming-lab/AutoResearchClaw Fully autonomous & self-evolving research from idea to paper. Chat an Idea. Get a Paper. � | 14,344 | Claude Code | 9 | — |
| ResearAI/DeepScientist Now, Stronger AI Pushes Frontiers, Stronger Our Shared Future. | 3,315 | Claude Code, Codex, OpenCode | 2 | 6,140 tok |
| huangwb8/ChineseResearchLaTeX A collection of commonly used LaTeX templates for Chinese research | 2,700 | Claude Code, Codex, OpenCode | 2 | 11,923 tok |
| HarleyCoops/Math-To-Manim Create Epic Math and Physics Animations & Study Notes From Text and Images. | 2,565 | Claude Code, Codex, GitHub Copilot, OpenCode | 6 | 12,381 tok |
| K-Dense-AI/claude-scientific-writer k-dense.ai A general purpose scientific writer | 2,305 | Claude Code, Codex, OpenCode | 28 | 10,828 tok |
| tsingyuai/scientify Automatic and end-to-end scientific research workflow enabled by OpenClaw. Produces state- | 2,237 | Claude Code | 1 | 1,896 tok |
| skyllwt/AutoSci Karpathy's LLM-Wiki vision, fully realized — wiki-centric full-lifecycle AI research platf | 1,660 | Claude Code | 29 | 584 tok |
| omicverse/omicverse omicverse.readthedocs.io A python library for multi omics included bulk, single cell and spatial RNA-seq analysis. | 1,193 | Claude Code | 31 | — |
| NVIDIA-NeMo/Gym docs.nvidia.com Evaluate and improve models and agents using environments | 1,168 | Claude Code, Codex, OpenCode | 9 | 2,292 tok |
| ClawBio/ClawBio clawbio.github.io 🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproduc | 1,126 | Claude Code, Codex, OpenCode | 2 | 15,180 tok |
| PharMolix/OpenBioMed | 1,107 | Claude Code | 1 | 1,523 tok |
| huifer/WellAlly-health wellally.tech Ally-Health is an intelligent healthcare assistant that harnesses advanced AI technology a | 939 | Claude Code | 77 | — |
| Tencent-Hunyuan/UniRL unirl-project.github.io UniRL is a Framework for Unified Multimodal Model Reinforcement Learning | 932 | Claude Code, Codex, OpenCode | 4 | 1,425 tok |
| PINA-org/PINA pina-org.github.io Physics-Informed Neural networks for Advanced modeling | 790 | Claude Code, Codex, OpenCode | 13 | 832 tok |
| zhnnky329/MathModeling-skills Claude Code / Codex Skills for mathematical modeling competitions, supporting staged model | 731 | Claude Code, Codex, OpenCode | 32 | 3,168 tok |
| faridrashidi/cnsplots cnsplots.farid.one 🎨 Toolkit for generating publication-quality plots for Cell, Nature and Science journals | 663 | Claude Code, Codex, OpenCode | 2 | 1,381 tok |
| xjtulyc/MedgeClaw medgeai.cn Open-source AI research assistant for biomedicine — chat to run RNA-seq, drug discovery, c | 642 | Claude Code | 1 | 2,930 tok |
| etal/cnvkit cnvkit.readthedocs.org Copy number variant detection from targeted DNA sequencing | 616 | Claude Code, Codex, OpenCode | 2 | 2,478 tok |
| ethanweber/posterskill AI-assisted academic posters. | 614 | Claude Code | 1 | — |
| allenai/vla-evaluation-harness allenai.github.io One framework to evaluate any VLA model on any robot simulation benchmark. | 590 | Claude Code | 4 | 1,298 tok |
| ZimoLiao/scholaraio zimoliao.github.io Scholar All-In-One: A research infrastructure for AI agents | 569 | Claude Code, Codex, GitHub Copilot, Cursor, OpenCode | 51 | 2,598 tok |
| meodai/skill.color-expert Agent skill for color science expertise. Many references covering color spaces, accessibil | 569 | Claude Code | 1 | 379 tok |
| VSLAM-LAB/VSLAM-LAB A Comprehensive Framework for Visual SLAM Systems and Datasets | 553 | Claude Code | 5 | 2,084 tok |
| harbor-framework/terminal-bench-science terminal-bench-science.ai Terminal-Bench-Science: Evaluating AI agents on research workflows across scientific domai | 530 | Claude Code, Codex, OpenCode | 5 | 12,602 tok |
| VILA-Lab/FigMirror arxiv.org An Automated AI Agent Tool for Plotting Your Data in Any Paper's Figure Style. | 509 | Claude Code | 15 | — |
| lllllllama/RigorPilot-Skills | 484 | Claude Code, Codex, OpenCode | 5 | 799 tok |
| exon-research/genomi genomiagent.com Local-first, open-source Claude Science alternative, before Claude Science is a thing. Tur | 481 | Claude Code, Codex, OpenCode | 2 | 5,828 tok |
| fabio-rovai/open-ontologies gov.tesseract.academy AI-native ontology engine: a Rust MCP server with tools for building, validating, querying | 479 | Claude Code | 1 | 5,348 tok |
| NyxFoundation/speca speca.pages.dev SPECA: Specification-to-Checklist Agentic Auditing Framework | 454 | Claude Code | 4 | 2,563 tok |
| scunning1975/MixtapeTools Tools for coding, teaching, and presentations with AI assistance | 450 | Claude Code | 11 | — |
| Runchuan-BU/BioClaw AI-Powered Bioinformatics Research Assistant. Built on OpenClaw. | 405 | Claude Code | 13 | 1,198 tok |
| frenzymath/Danus Orchestrating Mathematical Reasoning Agents with Fact-Graph Memory | 403 | Claude Code, Codex, OpenCode | 5 | 2,595 tok |
| PKU-YuanGroup/OpenAI4S openai4s.org A Claude Science replica using the 9.9-yuan Doubao API | 387 | Claude Code, Codex, OpenCode | 2 | 7,507 tok |
| flexcompute/tidy3d docs.flexcompute.com fast, large scale photonic simulation platform | 362 | Claude Code, Codex, OpenCode | 2 | 1,612 tok |
| jaechang-hits/SciAgent-Skills omicshorizon.ai 197 bioinformatics & life science skills for Claude Code and AI agents — BixBench 92.0% ac | 361 | Claude Code, Codex, OpenCode | 2 | 6,404 tok |
| fizzbee-io/fizzbee fizzbee.io Easiest-ever formal methods language! Designed for developers crafting distributed systems | 347 | Claude Code, GitHub Copilot | 7 | 5,657 tok |
| drivelineresearch/autoresearch-claude-code Autonomous experiment loop skill for Claude Code — port of pi-autoresearch | 343 | Claude Code | 1 | 1,091 tok |
| OpenRaiser/PaperFit openraiser.github.io 📄 [Skill] Vision-in-the-loop LaTeX typesetting agent — auto-compile, render, diagnose, an | 333 | Claude Code | 10 | 4,804 tok |
| microprediction/precise microprediction.github.io Online Covariance and Correlation Estimation | 333 | Claude Code | 5 | — |
| K-Dense-AI/science-superpowers k-dense.ai Composable computational-science methodology skills for AI research agents — pre-registrat | 318 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 688 tok |
| raygon-renderer/thermite raygon-renderer.github.io Thermite SIMD: Melt your CPU | 317 | Claude Code | 1 | — |
| brycewang-stanford/StatsPAI StatsPAI is the first Agent-native Python library for causal inference and applied econome | 309 | Claude Code | 1 | 9,485 tok |
| safety-research/automated-w2s-research | 304 | Claude Code | 5 | — |
| AtomFlow-AI/MoleCode arxiv.org Molecode presents molecules as code and enables LLMs to operate and reason on chemistry di | 299 | Claude Code, Codex, OpenCode | 2 | 847 tok |
| apache/texera texera.apache.org Human-AI Collaborative Data Science Using Visual Workflows | 299 | Claude Code, Codex, OpenCode | 2 | 3,388 tok |
| Sibyl-Research-Team/AutoResearch-SibylSystem Fully Autonomous AI Research System with Self-Evolution, built natively on Claude Code | 277 | Claude Code | 50 | 5,223 tok |
| NVIDIA/cosmos-curator Cosmos Curator is a powerful video curation system that processes, analyzes, and organizes | 264 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 1,442 tok |