681 projects whose own agent configuration covers scientific. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,412Data and AI4,299Backend and APIs3,694Languages3,682Planning3,492Git and workflow3,285Code review2,942Memory and context2,581Research2,499Writing and docs2,458Testing2,454Frontend2,420
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorKiroWindsurf
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| karpathy/nanochat The best ChatGPT that $100 can buy. | 57,808 | Claude Code | 1 | — |
| K-Dense-AI/scientific-agent-skills arxiv.org Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 1 | 43,017 | Claude Code, Codex, OpenCode | 2 | 4,354 tok |
| NVIDIA/TensorRT-LLM nvidia.github.io TensorRT LLM provides users with an easy-to-use Python API to define Large Language Models | 14,556 | Claude Code, Codex, OpenCode | 42 | 2,974 tok |
| aiming-lab/AutoResearchClaw Fully autonomous & self-evolving research from idea to paper. Chat an Idea. Get a Paper. � | 14,344 | Claude Code | 9 | — |
| ResearAI/DeepScientist Now, Stronger AI Pushes Frontiers, Stronger Our Shared Future. | 3,315 | Claude Code, Codex, OpenCode | 2 | 6,140 tok |
| projectchrono/chrono projectchrono.org High-performance C++ library for multiphysics and multibody dynamics simulations | 3,014 | Codex, OpenCode | 1 | 2,012 tok |
| wasserth/TotalSegmentator Tool for robust segmentation of >100 important anatomical structures in CT and MR images | 2,971 | Codex, OpenCode | 1 | 1,221 tok |
| huangwb8/ChineseResearchLaTeX 中国科研常用LaTeX模板集 | 2,700 | Claude Code, Codex, OpenCode | 2 | 11,923 tok |
| HarleyCoops/Math-To-Manim Create Epic Math and Physics Animations & Study Notes From Text and Images. | 2,565 | Claude Code, Codex, GitHub Copilot, OpenCode | 6 | 12,381 tok |
| K-Dense-AI/claude-scientific-writer k-dense.ai A general purpose scientific writer | 2,305 | Claude Code, Codex, OpenCode | 28 | 10,828 tok |
| tsingyuai/scientify Automatic and end-to-end scientific research workflow enabled by OpenClaw. Produces state- | 2,237 | Claude Code | 1 | 1,896 tok |
| skyllwt/AutoSci Karpathy's LLM-Wiki vision, fully realized — wiki-centric full-lifecycle AI research platf | 1,660 | Claude Code | 29 | 584 tok |
| omicverse/omicverse omicverse.readthedocs.io A python library for multi omics included bulk, single cell and spatial RNA-seq analysis. | 1,193 | Claude Code | 31 | — |
| NVIDIA-NeMo/Gym docs.nvidia.com Evaluate and improve models and agents using environments | 1,168 | Claude Code, Codex, OpenCode | 9 | 2,292 tok |
| EliasOenal/multimon-ng | 1,135 | GitHub Copilot | 5 | 3,936 tok |
| ClawBio/ClawBio clawbio.github.io 🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproduc | 1,126 | Claude Code, Codex, OpenCode | 2 | 15,180 tok |
| PharMolix/OpenBioMed | 1,107 | Claude Code | 1 | 1,523 tok |
| xuzhougeng/wisp-science wispscience.com Open-source, local-first desktop AI research workbench for scientific computing with Pytho | 1,098 | Codex, OpenCode | 1 | 2,264 tok |
| huifer/WellAlly-health wellally.tech Ally-Health is an intelligent healthcare assistant that harnesses advanced AI technology a | 939 | Claude Code | 77 | — |
| Tencent-Hunyuan/UniRL unirl-project.github.io UniRL is a Framework for Unified Multimodal Model Reinforcement Learning | 932 | Claude Code, Codex, OpenCode | 4 | 1,425 tok |
| stencila/stencila stencila.io Documents with Scientific Intelligence | 903 | Codex, OpenCode | 1 | 1,388 tok |
| PINA-org/PINA pina-org.github.io Physics-Informed Neural networks for Advanced modeling | 790 | Claude Code, Codex, OpenCode | 13 | 832 tok |
| zhnnky329/MathModeling-skills 面向数学建模竞赛的 Claude Code / Codex Skills ，支持分阶段建模流程与 Python、MATLAB/北太天元代码分支。 | 731 | Claude Code, Codex, OpenCode | 32 | 3,168 tok |
| faridrashidi/cnsplots cnsplots.farid.one 🎨 Toolkit for generating publication-quality plots for Cell, Nature and Science journals | 663 | Claude Code, Codex, OpenCode | 2 | 1,381 tok |
| xjtulyc/MedgeClaw medgeai.cn Open-source AI research assistant for biomedicine — chat to run RNA-seq, drug discovery, c | 642 | Claude Code | 1 | 2,930 tok |
| genomoncology/biomcp biomcp.org BioMCP: Biomedical Model Context Protocol | 625 | Codex, OpenCode | 1 | 757 tok |
| etal/cnvkit cnvkit.readthedocs.org Copy number variant detection from targeted DNA sequencing | 616 | Claude Code, Codex, OpenCode | 2 | 2,478 tok |
| ethanweber/posterskill AI-assisted academic posters. | 614 | Claude Code | 1 | — |
| allenai/vla-evaluation-harness allenai.github.io One framework to evaluate any VLA model on any robot simulation benchmark. | 590 | Claude Code | 4 | 1,298 tok |
| ZimoLiao/scholaraio zimoliao.github.io Scholar All-In-One: A research infrastructure for AI agents | 569 | Claude Code, Codex, GitHub Copilot, Cursor, OpenCode | 51 | 2,598 tok |
| meodai/skill.color-expert Agent skill for color science expertise. Many references covering color spaces, accessibil | 569 | Claude Code | 1 | 379 tok |
| VSLAM-LAB/VSLAM-LAB A Comprehensive Framework for Visual SLAM Systems and Datasets | 553 | Claude Code | 5 | 2,084 tok |
| harbor-framework/terminal-bench-science terminal-bench-science.ai Terminal-Bench-Science: Evaluating AI agents on research workflows across scientific domai | 530 | Claude Code, Codex, OpenCode | 5 | 12,602 tok |
| VILA-Lab/FigMirror arxiv.org An Automated AI Agent Tool for Plotting Your Data in Any Paper's Figure Style. | 509 | Claude Code | 15 | — |
| lllllllama/RigorPilot-Skills | 484 | Claude Code, Codex, OpenCode | 5 | 799 tok |
| exon-research/genomi genomiagent.com Local-first, open-source Claude Science alternative, before Claude Science is a thing. Tur | 481 | Claude Code, Codex, OpenCode | 2 | 5,828 tok |
| fabio-rovai/open-ontologies gov.tesseract.academy AI-native ontology engine: a Rust MCP server with tools for building, validating, querying | 479 | Claude Code | 1 | 5,348 tok |
| NyxFoundation/speca speca.pages.dev SPECA: Specification-to-Checklist Agentic Auditing Framework | 454 | Claude Code | 4 | 2,563 tok |
| scunning1975/MixtapeTools Tools for coding, teaching, and presentations with AI assistance | 450 | Claude Code | 11 | — |
| appautomaton/latex-arxiv-SKILL appautomaton.renocrypt.com A highly customizable agentic harness for arXiv-ready ML/AI review papers (and beyond). It | 423 | Codex, OpenCode | 5 | 472 tok |
| LimHyungTae/awesome-claudecode-paper-proofreading Claude Code-driven research paper proofreading prompt | 418 | Codex, OpenCode | 1 | 1,274 tok |
| MinghuiChen43/awesome-deep-phenomena A curated list of papers of interesting empirical study and insight on deep learning. Cont | 409 | Codex, OpenCode | 1 | 1,891 tok |
| Runchuan-BU/BioClaw AI-Powered Bioinformatics Research Assistant. Built on OpenClaw. | 405 | Claude Code | 13 | 1,198 tok |
| frenzymath/Danus Orchestrating Mathematical Reasoning Agents with Fact-Graph Memory | 403 | Claude Code, Codex, OpenCode | 5 | 2,595 tok |
| PKU-YuanGroup/OpenAI4S openai4s.org 9.9 元豆包 API 复刻 Claude Science | 387 | Claude Code, Codex, OpenCode | 2 | 7,507 tok |
| NVIDIA/cuda-q-academic This repo contains CUDA-Q Academic materials, including self-paced Jupyter notebook module | 379 | Codex, OpenCode | 1 | 3,183 tok |
| flexcompute/tidy3d docs.flexcompute.com fast, large scale photonic simulation platform | 362 | Claude Code, Codex, OpenCode | 2 | 1,612 tok |
| jaechang-hits/SciAgent-Skills omicshorizon.ai 197 bioinformatics & life science skills for Claude Code and AI agents — BixBench 92.0% ac | 361 | Claude Code, Codex, OpenCode | 2 | 6,404 tok |
| fizzbee-io/fizzbee fizzbee.io Easiest-ever formal methods language! Designed for developers crafting distributed systems | 347 | Claude Code, GitHub Copilot | 7 | 5,657 tok |
| drivelineresearch/autoresearch-claude-code Autonomous experiment loop skill for Claude Code — port of pi-autoresearch | 343 | Claude Code | 1 | 1,091 tok |